Gene detail

Detail information of GWHGAAZE031330

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011034716.1	0	PREDICTED: cytochrome P450 704C1 isoform X2 [Populus euphratica]
COG	NP_241445.1	3E-42	cytochrome P450 hydroxylase
Swissprot	tr\|Q50EK3\|C04C1_PINTA	3E-180	Cytochrome P450 704C1
trEMBL	tr\|B9IC22\|B9IC22_POPTR	0	Cytochrome P450 family protein {ECO:0000313\|EMBL:EEE98386.1}
TAIR10	AT2G45510.1	0	cytochrome P450, family 704, subfamily A, polypeptide 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	57266980	57270498	+
GWHAAZE00000009	mRNA	57266980	57270498	+
GWHAAZE00000009	exon	57266980	57267501	+
GWHAAZE00000009	exon	57268046	57268330	+
GWHAAZE00000009	exon	57268997	57269335	+
GWHAAZE00000009	exon	57270024	57270224	+
GWHAAZE00000009	exon	57270316	57270498	+
GWHAAZE00000009	CDS	57266980	57267501	+
GWHAAZE00000009	CDS	57268046	57268330	+
GWHAAZE00000009	CDS	57268997	57269335	+
GWHAAZE00000009	CDS	57270024	57270224	+
GWHAAZE00000009	CDS	57270316	57270498	+

Transcript Sequence
>GWHTAAZE031364 ATGGACTACCTCTGTATCATGATCATCCTCTTAGCAATTATACCACTACTTCTTCTCATAACATTCATAGCTCTAACATCAAGAATCTTCATTGGGAAGTCAATAAAATCCCCAAAATACCCACCGGTGGCCGGGACTGTATTTGGCCAAATCTTCTACTTCAACAAACTCCATGACTACCTGGCAGACGTCGCTAAAAGGCACCCCACTTTCCGCCTTCTTTCTCCTGATCGAAGCGAAATATACACAACTGACACGCGTAACATTGAGCACATACTTAAGACAAATTTTGATAAGTACACAAAAGGGAAGTATAATCAAGATATAGTAACTGACCTTTTTGGTGAAGGGATATTCGCCGTTGACGGTGCCAAGTGGCGCCAGCAGAGGAAGCTGGCGAGTTTCGAGTTCTCAAATAGGGTGTTGAGAGACTTTAGCTGTAAAGTTTTTAGAACAAATGCAGCTAAGTTGGTTAGAATTGTTTCTGAGTTTTCTATGGCCAATCAAGTCTTTGATGCACAAGATTTACTAATGAAATGCACCCTGGACTCCATATTCAAAGTTGGCTTTGGAGTGGATTTGAATTGCCAAGAAGGATCAAGCAGAGATGGGAGCGTGTTTATCAGGGCATTTGATGATTCAAATGCATTGACATACTGGCGCTATGTAGATCCATCTTGGAAGCTAAAGAGGTTCCTTAACATTGGCTCTGAAGCTTCTTTAAAGAAGAACATTAAAGTCATTGACGATTTTGTACACGAAGTTATCAAGAAGAAAAGGCAACAGCAAGAAATGCAACAACATTGTAATGACAAGGAGGACATACTTTCAAGGTTTCTGGTGGAGAGCACAAGGGATCCAGAGGAGATGAATGATAAATATCTGAGGGATATAATTCTGAGTTTTATGATTGCTGGCAAAGATACTACTGCAAACACACTTTCTTGGTTATTCTACATGCTTTGCAAGAATCCACTCATACAAGAACGAATATTACTAGAAGTAAAAGAAGTTATGAACGATCAAGAGAATGAAGCGAATATTGAAGATTTTGTGGAGAAATTAACAGATGAAACACTTGAGAAAATGCACTATCTTCATGCAGCATTGACAGAAACCTTGAGGCTTTACCCTGCAGTACCAGTGGATGGTAGGTGTACAGAAGAAGATGACACTCTTCCTGATGGCTTTAAACTAAAAAAAGGCGATGGCGTATACTACATATCCTATGCAATGGGCCGGATGCCTTACATTTGGGGAGACGATGCGGAGGATTATAGACCAGAAAGATGGCTCAACAATGGGATTTTCCAACCCGAATCCCCATTCAAATTTATAGCATTTCATGCTGGTCCACGAATTTGTCTGGGAAAGGATTTTGCTTACCGCCAAATGAAGATAATGTCAATTGCTCTTATTCAATCATTTCGGTTTAGACTGTTTGATGATACGGAAAATGTGACTTATAGGACGATGTTTACACTTCATGTTAATGGGGGCCTTAATCTTCTTGCTGTTCCAAGAATATGA

Network for GWHGAAZE031330

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.23	p450	41	488	3.50E-78

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0005506	molecular_function	iron ion binding
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.121
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.094
	SRR3591709	Stem	1.328
	SRR3591710	White floral bud	0.784
	SRR3591711	White flower	0.093
	SRR3591712	Green floral bud	0.672
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.329
	SRR8316896	Juvenile bud stage	0.531
	SRR8316897	Juvenile bud stage	0.402
	SRR8316894	Third green stage	0.136
	SRR8316900	Third green stage	0.751
	SRR8316901	Third green stage	0.664
	SRR8316898	Complete white stage	0.475
	SRR8316899	Complete white stage	3.095
	SRR8316903	Complete white stage	0.629
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.070
	SRR8316906	Gold flowering stage	0.106
	SRR8316907	Gold flowering stage	0.068
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.715
	SRR6706287	Light intensity 50%	0.693
	SRR6706288	Light intensity 20%	0.798
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.086
	CNS0095593	Slightly white alabastrum(diploid) 2	0.490
	CNS0095594	Slightly white alabastrum(diploid) 3	0.155
	CNS0095595	Whole white alabastrum(diploid) 2	0.859
	CNS0095596	Whole white alabastrum(diploid) 3	0.994
	CNS0095597	Whole white alabastrum(diploid) 4	1.062
	CNS0095598	Silvery flower (diploied) 1	0.362
	CNS0095599	Silvery flower (diploied) 2	0.199
	CNS0095600	Silvery flower (diploied) 3	0.173
	CNS0095601	Golden flower (diploid) 1	0.640
	CNS0095602	Golden flower (diploid) 2	0.538
	CNS0095603	Golden flower (diploid) 3	0.580
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.069
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.131
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.237
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.587
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.649
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.269
	CNS0095610	Silvery flower (tetraploid) 1	0.131
	CNS0095611	Silvery flower (tetraploid) 2	0.633
	CNS0095612	Silvery flower (tetraploid) 3	0.444
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.143
CRA001975	CRR073297	Stem 1	0.061
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.153
	CRR073301	Leaf 2	0.047
	CRR073302	Leaf 3	0.035
	CRR073303	Juvenile bud 1	0.135
	CRR073304	Juvenile bud 2	0.226
	CRR073305	Juvenile bud 3	0.104
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.034
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.723
	CRR073319	Tawny withering 2	0.406
	CRR073320	Tawny withering 3	0.346