Gene detail

Detail information of GWHGAAZE031331

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010249227.1	0	PREDICTED: lysosomal alpha-mannosidase-like [Nelumbo nucifera]
COG	YP_004004108.1	0.0000006	glycoside hydrolase
Swissprot	tr\|C0HJB3\|MANA_CANEN	0	Alpha-mannosidase, light subunit {ECO:0000303\|PubMed:24221485}
trEMBL	tr\|M5WXQ9\|M5WXQ9_PRUPE	0	Alpha-mannosidase {ECO:0000256\|RuleBase:RU361199}
TAIR10	AT5G13980.2	0	Glycosyl hydrolase family 38 protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	57271622	57278521	+
GWHAAZE00000009	mRNA	57271622	57278521	+
GWHAAZE00000009	exon	57271622	57271819	+
GWHAAZE00000009	exon	57271903	57271977	+
GWHAAZE00000009	exon	57272067	57272155	+
GWHAAZE00000009	exon	57272278	57272452	+
GWHAAZE00000009	exon	57272576	57272695	+
GWHAAZE00000009	exon	57272974	57273057	+
GWHAAZE00000009	exon	57273139	57273210	+
GWHAAZE00000009	exon	57273578	57273678	+
GWHAAZE00000009	exon	57273762	57273855	+
GWHAAZE00000009	exon	57274040	57274207	+
GWHAAZE00000009	exon	57274495	57274560	+
GWHAAZE00000009	exon	57274726	57274782	+
GWHAAZE00000009	exon	57274871	57275093	+
GWHAAZE00000009	exon	57275222	57275361	+
GWHAAZE00000009	exon	57275443	57275508	+
GWHAAZE00000009	exon	57275661	57275720	+
GWHAAZE00000009	exon	57275812	57275883	+
GWHAAZE00000009	exon	57275980	57276027	+
GWHAAZE00000009	exon	57276098	57276217	+
GWHAAZE00000009	exon	57276439	57276504	+
GWHAAZE00000009	exon	57276740	57276852	+
GWHAAZE00000009	exon	57276985	57277069	+
GWHAAZE00000009	exon	57277173	57277346	+
GWHAAZE00000009	exon	57277462	57277557	+
GWHAAZE00000009	exon	57277978	57278025	+
GWHAAZE00000009	exon	57278151	57278219	+
GWHAAZE00000009	exon	57278324	57278521	+
GWHAAZE00000009	CDS	57271622	57271819	+
GWHAAZE00000009	CDS	57271903	57271977	+
GWHAAZE00000009	CDS	57272067	57272155	+
GWHAAZE00000009	CDS	57272278	57272452	+
GWHAAZE00000009	CDS	57272576	57272695	+
GWHAAZE00000009	CDS	57272974	57273057	+
GWHAAZE00000009	CDS	57273139	57273210	+
GWHAAZE00000009	CDS	57273578	57273678	+
GWHAAZE00000009	CDS	57273762	57273855	+
GWHAAZE00000009	CDS	57274040	57274207	+
GWHAAZE00000009	CDS	57274495	57274560	+
GWHAAZE00000009	CDS	57274726	57274782	+
GWHAAZE00000009	CDS	57274871	57275093	+
GWHAAZE00000009	CDS	57275222	57275361	+
GWHAAZE00000009	CDS	57275443	57275508	+
GWHAAZE00000009	CDS	57275661	57275720	+
GWHAAZE00000009	CDS	57275812	57275883	+
GWHAAZE00000009	CDS	57275980	57276027	+
GWHAAZE00000009	CDS	57276098	57276217	+
GWHAAZE00000009	CDS	57276439	57276504	+
GWHAAZE00000009	CDS	57276740	57276852	+
GWHAAZE00000009	CDS	57276985	57277069	+
GWHAAZE00000009	CDS	57277173	57277346	+
GWHAAZE00000009	CDS	57277462	57277557	+
GWHAAZE00000009	CDS	57277978	57278025	+
GWHAAZE00000009	CDS	57278151	57278219	+
GWHAAZE00000009	CDS	57278324	57278521	+

Transcript Sequence
>GWHTAAZE031365 ATGGAAATTCTTCGTGCGTGTCTGTTGGTTTTAATTGCGAGTGCTGTGTGTGTGGAACCGAAAAATGTGTTTTACAATACTTCCCATAGCATTGTTCCTGGAAAACTCAATGTTCATTTGGTAGCTCACACGCATGATGATGTTGGGTGGATGAAGACTTTCGATCAGTACTATTTCGGTTCCAATAACACCATTCAGGGAGCATGTGTTCAAAACGTACTTGATTCATTGGTTCCGGCATTACTAGCTGACAAAAACCGAAAATTCGTTTATGCATTTTTCAAGCGCTGGTGGTGTGAACAAACTGATGAAGTGCAAAGCACAGTCAAGAAGCTTGTGACCTTGGGTCAACTTGAGTTCATAAATGGGGGTATTTGCATGCACGATGAAGGGGCCACACATTTCATCGATATGATAGATCAGACAACACTTGGGCACCAGTTTATTAAACAGCAGTTCAACGTAACTCCACGAATTGGTTGGCAAATTGATCCGTTTGGACATTCTGCGGTGCAGGCTTACCTACTAGGGGCAGAGGTTGGATTTGACTCTCTTTTCTTTGCACGAATTGACTACCAAGACAGAACTAAGCGGAAAAATGACAAGACTCTCGAGGTTGTCTGGCAAGGTTCTAAGAGTCTTGGTTCATCTGCACAAATTTTTGCCACCGTGTTTCCTGATCATTATGGACCTCCAAGTGGTTTCTTCTTTGAAGTAGATGATGATTCCCCCAATGTCCAGGATAACATCAATTTGTTTGACTACAACGTCCAAGAACGTGTTAATGATTTTGTAGCCGCAGCTTTATCACAGGATGGCCGTGTCAATGCCTTGTATTCAACCCCATCTATTTACACCAATGCAAAACATGCCGCGAATGAGTCCTGGCCACTCAAAATGGATGATTTTTTTCCGTATGCAGACGCAGTTAATCGTTACTTCACCGGATATTTTACAAGCAGGCCAGCTCTTAAAGGCTATATTAGACATTTGAGTGGCTATTATTTGGCAGCTAGGCAATTGGAATTCTTTAAGGGAAAGAGTAAAGAAGGGCCAACTATGGATGGTTTGGCCAATGCTTTGGCAATTACTCAGCATCATGATGCAGTTACTGGTACAGAACGGCAACACGTGGCTAATGATTATGCAAAAATGCTGTCAGTAGGTTACAAGGAGTGTCCGCTTCTGAACATAACCTATTGTCCTCCAACAGAAGTTGATTTATCACTTGGAAAAAGACTGGTGGTGGTTGTCTACAATTCTCTAGGGTGGAAAAGAGAAGATGTCATAAGAATTCCTTTAATCAACAAAAATGTCACTGTTGAGAATTTCAATGGGAAAGAAATTGAATCACAGATCTTTCCAGTGACTAATGAGTCTATAGCCGTAAGAAACTACTATGCTACTGCATATGTTGGTATACCCCCAACTCAGACCCCTCATTATTGGCTTGCATTCACTGCATCTGTTCCACCTCTCGGTTTTAGCACTTATTATGTCGTTTCAAGCACTAAAACAGCAGCTGCTACTTTAGCATGGCAAACAGTTTACAAGTCTACCGAGAGTGAAAATGGTACTATAAAAGTAGGCCAGGGAAATTTAAAGCTTATATATTCTCAAAACAGAGGAAAATTAAAACAGTATGTCAATAGTAGAAGCTTGATTAATGCGCCTGTAGAGCAATCGTACAGCTACTATATTGGAAATGATGGAAGTGGGAATACTCAGGCCTCTGGAGCATACATGTTCTTCCCAAATGGTACAGTTCCCATCCATTCCGAAGATCAGGCTCCTTTGATGGTTATGCGGGGGCCACTATTTGACGAAGTTCATGAGAAAATCAATTCATGGATATATCAGATCACGAGAGTGTACAAAGGAAAGGAGCATGCAGAAGTTGAGTTTACCATTGGCCCCATACCTATAGATGATGGAATTGGGAAGGAAGTTATAACTCAGATTACAACAAACATGAAAAGCAACAGAACATTTTTCACAGATTCAAATGGACGCGATTTCCTTAAACGGATTCGAGATTATAGAGCCGATTGGGACCTGGAAGTTATGCAACCTATTGCAGGAAATTACTATCCTATTGTTCTTGGGAGTTATATAAAAGATGACAGCACTGAGCTCTCAATTTTGGTAGATAGATCCGTGGGGGGATCCAGCATCATCGATGGGCAATTGGAGCTGATGCTCCATAGGAGATTTGTTCATGATGATTCTGGTGGTCTTGTATTGGTACTAAACGAAACAGTTTGTATTCTCAGTGAATGCAAAGGACTAACTCCTCGATGGTGCCTTAAGAAGGTAAATTTTTATGGCGCCACTGTTCTACATGTTGGATTACAGATCCAAGGGAAGTATTACCTGAGAATTGATCCTGTTGGAGAGGGAGCGAAATGGCGTCGGTCATTCGGTCAGGAGATATATTCACCATTTCTCTTAGCCTTCACTGAGCAGGACGGAGATAATTGGACAAATTTACAGGTACCAACATTTTCAGGGATGGATCCTACCTACAGTCTCCCAGATAATATTGCAATTATAACCCTCCAGGAGCTTGAAGATGGAAAAGTTCTCCTTCGTTTAGCACACATATATGAGGTTGGAGAGGACAAGGACCTTTCAAATATGGCAACTGTTGAATTGAAAAAACTGTTCCCAGAGAGAAAGATAAACAAAATTTCAGAGATGAATTTATCAGCTAATCAAGAAAGAGAAGATATGGAGAAGAAAAGATTAGTGTGGAAAGTAGAAGGCTCTCATGATGACGAACCCAAGGAATCGAGAGGCAGTCCAATTGATGCAGAGACACTGATGGTCGAACTTGCCCCGATGGAAATTCGTACTTTCATTATCATCTTAAGCTAA

Network for GWHGAAZE031331

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01074.23	Glyco_hydro_38N	37	268	3.90E-65
PF09261.12	Alpha-mann_mid	313	393	2.00E-17
PF07748.14	Glyco_hydro_38C	531	743	1.90E-43
PF17677.2	Glyco_hydro38C2	847	954	8.70E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01191	MAN2C1	Other glycan degradation	map00511

Gene Ontology

GO term	Ontology	Name
GO:0006013	biological_process	mannose metabolic process
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004559	molecular_function	alpha-mannosidase activity
GO:0003824	molecular_function	catalytic activity
GO:0030246	molecular_function	carbohydrate binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.138
	SRR3591706	second leaf	0.752
	SRR3591707	mature leaf	3.386
	SRR3591708	Shoot apex	3.632
	SRR3591709	Stem	29.579
	SRR3591710	White floral bud	1.632
	SRR3591711	White flower	2.526
	SRR3591712	Green floral bud	0.631
	SRR3591713	Yellow flower	0.683
SRP173429	SRR8316895	Juvenile bud stage	1.671
	SRR8316896	Juvenile bud stage	1.516
	SRR8316897	Juvenile bud stage	0.389
	SRR8316894	Third green stage	1.031
	SRR8316900	Third green stage	1.081
	SRR8316901	Third green stage	0.719
	SRR8316898	Complete white stage	0.378
	SRR8316899	Complete white stage	2.409
	SRR8316903	Complete white stage	0.924
	SRR8316902	Silver flowering stage	0.303
	SRR8316904	Silver flowering stage	0.419
	SRR8316905	Silver flowering stage	0.163
	SRR8316906	Gold flowering stage	0.449
	SRR8316907	Gold flowering stage	0.802
	SRR8316908	Gold flowering stage	0.591
SRP132670	SRR6706286	Control	0.746
	SRR6706287	Light intensity 50%	0.783
	SRR6706288	Light intensity 20%	0.824
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.199
	CNS0095593	Slightly white alabastrum(diploid) 2	1.135
	CNS0095594	Slightly white alabastrum(diploid) 3	1.127
	CNS0095595	Whole white alabastrum(diploid) 2	1.265
	CNS0095596	Whole white alabastrum(diploid) 3	0.254
	CNS0095597	Whole white alabastrum(diploid) 4	0.928
	CNS0095598	Silvery flower (diploied) 1	13.707
	CNS0095599	Silvery flower (diploied) 2	14.295
	CNS0095600	Silvery flower (diploied) 3	1.384
	CNS0095601	Golden flower (diploid) 1	17.248
	CNS0095602	Golden flower (diploid) 2	4.050
	CNS0095603	Golden flower (diploid) 3	4.599
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.920
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.445
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.386
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.461
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.172
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.689
	CNS0095610	Silvery flower (tetraploid) 1	1.174
	CNS0095611	Silvery flower (tetraploid) 2	0.995
	CNS0095612	Silvery flower (tetraploid) 3	0.553
	CNS0095613	Golden flower (tetraploid) 1	0.865
	CNS0095614	Golden flower (tetraploid) 2	0.802
	CNS0095615	Golden flower (tetraploid) 3	0.529
CRA001975	CRR073297	Stem 1	0.425
	CRR073298	Stem 2	0.455
	CRR073299	Stem 3	0.046
	CRR073300	Leaf 1	0.369
	CRR073301	Leaf 2	0.483
	CRR073302	Leaf 3	0.046
	CRR073303	Juvenile bud 1	0.037
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.122
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.005
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.015
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.130
	CRR073316	Gold flowering 2	0.279
	CRR073317	Gold flowering 3	0.020
	CRR073318	Tawny withering 1	3.579
	CRR073319	Tawny withering 2	5.684
	CRR073320	Tawny withering 3	3.104