Gene detail

Detail information of GWHGAAZE031338

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002272415.2	0	PREDICTED: gibberellin 20 oxidase 1-D-like [Vitis vinifera]
COG	NP_252880.1	2E-32	iron/ascorbate oxidoreductase
Swissprot	tr\|Q39110\|GAOX1_ARATH	2E-159	Gibberellin 20 oxidase 1
trEMBL	tr\|F6I351\|F6I351_VITVI	0	GA20ox1 {ECO:0000313\|EMBL:AGQ42623.1}
TAIR10	AT4G25420.1	2E-128	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	57363055	57365436	-
GWHAAZE00000009	mRNA	57363055	57365436	-
GWHAAZE00000009	exon	57363055	57363330	-
GWHAAZE00000009	exon	57364118	57364439	-
GWHAAZE00000009	exon	57364850	57365436	-
GWHAAZE00000009	five_prime_UTR	57365371	57365436	-
GWHAAZE00000009	CDS	57364850	57365370	-
GWHAAZE00000009	CDS	57364118	57364439	-
GWHAAZE00000009	CDS	57363055	57363330	-

Transcript Sequence
>GWHTAAZE031372 CATCTCCCCACTTCTATCCCATTATCTCACACACACTTATTCAAAAAAATAAAATAAAATAAAATCATGCCAATGCCACAACCAAAACCACACCAAAAACCCCTCAGTACGTTCGACTCCATGCTCCTTGAACACCAGCACAACATACCCCCTCAATTCATCTGGCCCCACCACGATACCCCCCTCCGTGACCCACACCTACCCCCCCTATACGTGCCCCCAATCGACCTGCATGCTTTCTTCTCCGGTGACCCCCCAGCCGTAGCTGAGGTGGCTCTGCTAGTCGACAATGCATGCCGAAAGCATGGGTTCTTTCTCGTGGTGAACCACGGGGTCAATCCCAAGCTCATAGAAGAGGCCCACCACTACGCGGACCTCTTCTTTGAAATGTCGCTAAAAGAGAAAATGAAGGCCGAGAGAAAGGCCGGGGAGTATTGTGGGTATGCTAGTAGTTTTACTAATAGGTTTACTTCTAATCTTCCGTGGAAAGAAACACTTTCGTTTAGATATTCTCCCGAGGAAAGGAATTCAAATGTGGTGGAGGATTATTTCTTGGATGTAATGGGAGAAGATTTCAGACAATTCGGGAGGGTATACCAAGAATATTGTGAAGCCATGAGCAATCTCTCACTTGGAATAATGGAGCTATTGGGCATCAGCCTTGGTGTGGGCCCATCTCATTTTAGGGAATTCTTTGAAGAAAATGACTCAATAATGAGACTAAACTATTACCCACCTTGCCAAAAACCAGATCTAACACTTGGAACTGGACCTCATTGTGACCCAACATCTTTAACCATCCTTCATCAAGATGATGTTGGTGGCTTACAAGTCTTTGCTGATGAAAAATGGCACTCCATTCTTCCCACTTCACAAGCATTCGTTGTTAATATTGGTGACACTTTCATGGCTCTATCAAATGGAATTTACAAGAGTTGCTTGCACAGAGCAGTGGTTAACAAACAAAGTCCGAGGAAATCTCTTGCATTCTTTCTCTCTCCAAAGATGAACCACGTCATCACCCCCCCAAAATCATTATTGACTAATAATAATAAATATGAAATTCAAAGGATATATCCTGATTTCACTTGGTCAACTCTACTCCAATTCACGCAGAAACACTATAGAGCTGATATGAAAACCCTTGATGCTTTTGCCAATTGGCTGCAACACAAAAACAACTAA

Network for GWHGAAZE031338

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14226.7	DIOX_N	50	152	2.20E-23
PF03171.21	2OG-FeII_Oxy	214	312	4.70E-29

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05282	E1.14.11.12	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Diterpenoid biosynthesis	map00904

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.893
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.189
	SRR3591710	White floral bud	2.462
	SRR3591711	White flower	0.570
	SRR3591712	Green floral bud	19.863
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.367
	SRR8316896	Juvenile bud stage	0.605
	SRR8316897	Juvenile bud stage	0.705
	SRR8316894	Third green stage	5.424
	SRR8316900	Third green stage	41.729
	SRR8316901	Third green stage	29.466
	SRR8316898	Complete white stage	7.918
	SRR8316899	Complete white stage	33.434
	SRR8316903	Complete white stage	8.272
	SRR8316902	Silver flowering stage	0.218
	SRR8316904	Silver flowering stage	0.477
	SRR8316905	Silver flowering stage	0.087
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.085
SRP132670	SRR6706286	Control	12.361
	SRR6706287	Light intensity 50%	16.614
	SRR6706288	Light intensity 20%	17.664
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.378
	CNS0095593	Slightly white alabastrum(diploid) 2	24.009
	CNS0095594	Slightly white alabastrum(diploid) 3	4.270
	CNS0095595	Whole white alabastrum(diploid) 2	13.458
	CNS0095596	Whole white alabastrum(diploid) 3	2.543
	CNS0095597	Whole white alabastrum(diploid) 4	6.001
	CNS0095598	Silvery flower (diploied) 1	0.552
	CNS0095599	Silvery flower (diploied) 2	1.136
	CNS0095600	Silvery flower (diploied) 3	0.899
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.035
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.326
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.007
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.051
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.766
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.656
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.860
	CNS0095610	Silvery flower (tetraploid) 1	3.813
	CNS0095611	Silvery flower (tetraploid) 2	0.061
	CNS0095612	Silvery flower (tetraploid) 3	0.276
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.744
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	3.426
	CRR073298	Stem 2	5.718
	CRR073299	Stem 3	0.769
	CRR073300	Leaf 1	47.055
	CRR073301	Leaf 2	57.069
	CRR073302	Leaf 3	33.020
	CRR073303	Juvenile bud 1	33.779
	CRR073304	Juvenile bud 2	23.904
	CRR073305	Juvenile bud 3	59.257
	CRR073306	Third green 1	0.300
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.788
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.040
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.181