Detail information of GWHGAAZE031348


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010278504.19.172E-145PREDICTED: zinc finger CCCH domain-containing protein 48-like isoform X1 [Nelumbo nucifera]
COGYP_007126274.15E-19(Myosin heavy-chain) kinase
Swissprottr|Q9FNZ2|C3H48_ARATH3E-141Zinc finger CCCH domain-containing protein 48
trEMBLtr|R0GZR9|R0GZR9_9BRAS3E-142Uncharacterized protein {ECO:0000313|EMBL:EOA16668.1}
TAIR10AT4G25440.12E-116zinc finger WD40 repeat protein 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5762069357624972-
GWHAAZE00000009mRNA5762069357624972-
GWHAAZE00000009exon5762443057624972-
GWHAAZE00000009exon5762425557624350-
GWHAAZE00000009exon5762407157624160-
GWHAAZE00000009exon5762386257623963-
GWHAAZE00000009exon5762321657623356-
GWHAAZE00000009exon5762200757622126-
GWHAAZE00000009exon5762186657621925-
GWHAAZE00000009exon5762147557621572-
GWHAAZE00000009exon5762069357621015-
GWHAAZE00000009CDS5762443057624972-
GWHAAZE00000009CDS5762425557624350-
GWHAAZE00000009CDS5762407157624160-
GWHAAZE00000009CDS5762386257623963-
GWHAAZE00000009CDS5762321657623356-
GWHAAZE00000009CDS5762200757622126-
GWHAAZE00000009CDS5762186657621925-
GWHAAZE00000009CDS5762147557621572-
GWHAAZE00000009CDS5762087157621015-
GWHAAZE00000009three_prime_UTR5762069357620870-
Transcript Sequence

Network for GWHGAAZE031348

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD401732081.20E-05
PF00400.33WD403323660.0002
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding
GO:0046872molecular_functionmetal ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.437
SRR3591706second leaf0.586
SRR3591707mature leaf0.880
SRR3591708Shoot apex2.509
SRR3591709Stem4.563
SRR3591710White floral bud4.371
SRR3591711White flower3.898
SRR3591712Green floral bud7.337
SRR3591713Yellow flower3.135
SRP173429 SRR8316895Juvenile bud stage 6.507
SRR8316896Juvenile bud stage 14.335
SRR8316897Juvenile bud stage 4.411
SRR8316894Third green stage 4.109
SRR8316900Third green stage 11.510
SRR8316901Third green stage 12.148
SRR8316898Complete white stage 1.976
SRR8316899Complete white stage 9.005
SRR8316903Complete white stage 2.523
SRR8316902Silver flowering stage0.802
SRR8316904Silver flowering stage2.261
SRR8316905Silver flowering stage0.942
SRR8316906Gold flowering stage 2.320
SRR8316907Gold flowering stage 2.335
SRR8316908Gold flowering stage 2.617
SRP132670SRR6706286Control6.358
SRR6706287Light intensity 50%7.126
SRR6706288Light intensity 20%6.887
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.898
CNS0095593Slightly white alabastrum(diploid) 212.215
CNS0095594Slightly white alabastrum(diploid) 320.598
CNS0095595Whole white alabastrum(diploid) 217.496
CNS0095596Whole white alabastrum(diploid) 320.454
CNS0095597Whole white alabastrum(diploid) 412.363
CNS0095598Silvery flower (diploied) 13.134
CNS0095599Silvery flower (diploied) 23.866
CNS0095600Silvery flower (diploied) 34.537
CNS0095601Golden flower (diploid) 12.759
CNS0095602Golden flower (diploid) 23.131
CNS0095603Golden flower (diploid) 32.796
CNS0095604Slightly white alabastrum(tetraploid) 113.557
CNS0095605Slightly white alabastrum(tetraploid) 215.348
CNS0095606Slightly white alabastrum(tetraploid) 36.475
CNS0095607Whole white alabastrum(tetraploid) 18.847
CNS0095608Whole white alabastrum(tetraploid) 27.296
CNS0095609Whole white alabastrum(tetraploid) 36.328
CNS0095610Silvery flower (tetraploid) 12.510
CNS0095611Silvery flower (tetraploid) 20.966
CNS0095612Silvery flower (tetraploid) 30.872
CNS0095613Golden flower (tetraploid) 13.526
CNS0095614Golden flower (tetraploid) 20.825
CNS0095615Golden flower (tetraploid) 31.140
CRA001975CRR073297Stem 112.851
CRR073298Stem 211.717
CRR073299Stem 37.231
CRR073300Leaf 112.965
CRR073301Leaf 213.343
CRR073302Leaf 311.078
CRR073303Juvenile bud 18.610
CRR073304Juvenile bud 24.286
CRR073305Juvenile bud 310.680
CRR073306Third green 11.330
CRR073307Third green 21.057
CRR073308Third green 32.241
CRR073309Second white 11.198
CRR073310Second white 20.778
CRR073311Second white 30.826
CRR073312Silver flowering 10.383
CRR073313Silver flowering 21.198
CRR073314Silver flowering 31.254
CRR073315Gold flowering 10.993
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.075
CRR073318Tawny withering 11.209
CRR073319Tawny withering 22.684
CRR073320Tawny withering 32.609