Gene detail

Detail information of GWHGAAZE031356

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011035358.1	2.3731E-120	PREDICTED: F-box protein At4g00755 isoform X1 [Populus euphratica]
Swissprot	tr\|Q8LG03\|FB345_ARATH	2E-90	F-box protein At4g00755
trEMBL	tr\|B9IC68\|B9IC68_POPTR	5E-119	Uncharacterized protein {ECO:0000313\|EMBL:EEE98409.2}
TAIR10	AT4G00755.2	7E-75	F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	57730348	57734769	-
GWHAAZE00000009	mRNA	57730348	57734769	-
GWHAAZE00000009	exon	57730348	57730610	-
GWHAAZE00000009	exon	57731612	57731784	-
GWHAAZE00000009	exon	57731884	57732303	-
GWHAAZE00000009	exon	57734643	57734769	-
GWHAAZE00000009	CDS	57734643	57734769	-
GWHAAZE00000009	CDS	57731884	57732303	-
GWHAAZE00000009	CDS	57731612	57731784	-
GWHAAZE00000009	CDS	57730446	57730610	-
GWHAAZE00000009	three_prime_UTR	57730348	57730445	-

Transcript Sequence
>GWHTAAZE031392 ATGGGGACCCGTATTGACTTCCTAAAATGGCTTGAAACCGACGTGTCCATGGATATCATGACATGTCTGGATGATCCATCTGATCTCGTCCGTGTTAGTTCTGTTTCGAAATTCTGGCGCCATTTCGTTATTACCCACGGATTCTGTAAGAAGCTATGTCTGAGGATGTTTCCTCAGGTTGCTGATATTGCTGATGTAACTGAACAAAGCTGCAGAATGGAGAAATCAGTGGACGTCGGATGTAGCAAGTCAACAGAATGGGAAAATCTTGAGCAGGACCACAGAGTCTACGCTTCTCTATCTCGAGCCCTCACAGCGTTCAAATTATCTGTTTGTATTGTTGATGCCGTTAGTGCTTCTAGCACCGACAACTATCCTCGAGAAAGCATTGTTAATACGGTTGGTCCAGAAGTCCCACAAATAGGCCGTAGAACCTTGTACTGGTCAAGTAAAGGACACAGAGATCCTCAAGTACCTGAGACTCTTATATATAGATTAAGAGCTGATTTTTGTGTTATTAGTGAAATCGACATACAGCCCTTCCAAGCCTATTTTCAGTCTGGGTTTCCAATTTACTCAGCAAAGTCTGTTCGATTCCGAATGGGTCACCCCAAATGTCCTAGTGATATAGGGCGAGACCTTTTGCATTTACCTTTGCAGCAATGGGCTGATGGTAAGTTTGTTTGGACGTACACTTCACAAGAGTTCCCAATGGCACAGGAGAATCGATTGCAGAGGTTCAAGTTGCCAGAACCTGTTATCTGCATGGGTGGCTTTTTGCAAATTGAGCTATTGGGTAGAGTCCAGAGACAAGAAATGGATAACCTATTTTACATATGGTCAGTGATGTACAGTCCCTCTGCTCTTCCACTTAAAATTTGGTAAACCCGTAGATAAAATTGTGGTGGCTTTGTTCAACCAACCCACTTTACCATGCAACTTCTTTTTTAAATTGTAATTAATAGTTTTAAGAGTAAAAATGG

Network for GWHGAAZE031356

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.009
	SRR3591706	second leaf	21.927
	SRR3591707	mature leaf	22.794
	SRR3591708	Shoot apex	31.473
	SRR3591709	Stem	27.938
	SRR3591710	White floral bud	22.778
	SRR3591711	White flower	23.501
	SRR3591712	Green floral bud	25.743
	SRR3591713	Yellow flower	19.234
SRP173429	SRR8316895	Juvenile bud stage	14.923
	SRR8316896	Juvenile bud stage	24.091
	SRR8316897	Juvenile bud stage	11.555
	SRR8316894	Third green stage	9.752
	SRR8316900	Third green stage	24.767
	SRR8316901	Third green stage	24.766
	SRR8316898	Complete white stage	7.215
	SRR8316899	Complete white stage	28.899
	SRR8316903	Complete white stage	13.015
	SRR8316902	Silver flowering stage	9.882
	SRR8316904	Silver flowering stage	11.730
	SRR8316905	Silver flowering stage	5.732
	SRR8316906	Gold flowering stage	18.865
	SRR8316907	Gold flowering stage	17.759
	SRR8316908	Gold flowering stage	16.413
SRP132670	SRR6706286	Control	15.896
	SRR6706287	Light intensity 50%	18.382
	SRR6706288	Light intensity 20%	17.848
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.899
	CNS0095593	Slightly white alabastrum(diploid) 2	17.026
	CNS0095594	Slightly white alabastrum(diploid) 3	19.427
	CNS0095595	Whole white alabastrum(diploid) 2	16.716
	CNS0095596	Whole white alabastrum(diploid) 3	18.236
	CNS0095597	Whole white alabastrum(diploid) 4	21.571
	CNS0095598	Silvery flower (diploied) 1	15.510
	CNS0095599	Silvery flower (diploied) 2	14.147
	CNS0095600	Silvery flower (diploied) 3	20.552
	CNS0095601	Golden flower (diploid) 1	18.598
	CNS0095602	Golden flower (diploid) 2	25.376
	CNS0095603	Golden flower (diploid) 3	22.745
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.229
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.631
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.749
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.856
	CNS0095608	Whole white alabastrum(tetraploid) 2	22.827
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.762
	CNS0095610	Silvery flower (tetraploid) 1	19.876
	CNS0095611	Silvery flower (tetraploid) 2	26.498
	CNS0095612	Silvery flower (tetraploid) 3	21.144
	CNS0095613	Golden flower (tetraploid) 1	12.816
	CNS0095614	Golden flower (tetraploid) 2	19.826
	CNS0095615	Golden flower (tetraploid) 3	21.961
CRA001975	CRR073297	Stem 1	32.273
	CRR073298	Stem 2	29.326
	CRR073299	Stem 3	35.880
	CRR073300	Leaf 1	30.601
	CRR073301	Leaf 2	27.815
	CRR073302	Leaf 3	32.106
	CRR073303	Juvenile bud 1	31.185
	CRR073304	Juvenile bud 2	20.970
	CRR073305	Juvenile bud 3	28.887
	CRR073306	Third green 1	12.660
	CRR073307	Third green 2	13.563
	CRR073308	Third green 3	11.694
	CRR073309	Second white 1	16.911
	CRR073310	Second white 2	15.608
	CRR073311	Second white 3	16.988
	CRR073312	Silver flowering 1	16.421
	CRR073313	Silver flowering 2	15.887
	CRR073314	Silver flowering 3	21.035
	CRR073315	Gold flowering 1	21.986
	CRR073316	Gold flowering 2	21.899
	CRR073317	Gold flowering 3	27.788
	CRR073318	Tawny withering 1	20.073
	CRR073319	Tawny withering 2	19.461
	CRR073320	Tawny withering 3	25.369