Gene detail

Detail information of GWHGAAZE031361

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009778598.1	4.0859E-158	PREDICTED: E3 ubiquitin-protein ligase At1g63170-like [Nicotiana sylvestris]
Swissprot	tr\|Q93Z92\|RING4_ARATH	8E-114	E3 ubiquitin-protein ligase At4g11680
trEMBL	tr\|M1CNN5\|M1CNN5_SOLTU	1E-154	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400071379}
TAIR10	AT4G11680.1	3E-81	Zinc finger, C3HC4 type (RING finger) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	57854597	57859929	+
GWHAAZE00000009	mRNA	57854597	57859929	+
GWHAAZE00000009	exon	57854597	57854859	+
GWHAAZE00000009	exon	57856724	57856843	+
GWHAAZE00000009	exon	57856945	57857077	+
GWHAAZE00000009	exon	57858049	57858213	+
GWHAAZE00000009	exon	57859325	57859929	+
GWHAAZE00000009	CDS	57854597	57854859	+
GWHAAZE00000009	CDS	57856724	57856843	+
GWHAAZE00000009	CDS	57856945	57857077	+
GWHAAZE00000009	CDS	57858049	57858213	+
GWHAAZE00000009	CDS	57859325	57859501	+
GWHAAZE00000009	three_prime_UTR	57859502	57859929	+

Transcript Sequence
>GWHTAAZE031397 ATGAGTTGGGATGAGTCTCCGACAATGCCGTTGAGGCTTTGGATTGGTGGATATGCATTTCAGTGTGTGCTGCATATGGTGTGCGTTTGGGTTGAGTATAAGCGCCGGTATCAGCAGCGTACTTTGCCTGTTGATGCTTTGAGTACGGGGCCTAGTAGTGGTAGTTGGTGGAATGGTGGGAATTCTAATTCCAGTTCAGCTAGTGAGGGAGGGGAGTCTCTGGAATTTGTCTCAGAGAGGCCTCAGAATGGGGATGAGACTAGTGTTGCTAAACACTTGGAGTCTGCAAATACAATGTTTTCATTCATTTGGTGGATCATTGGATTTTATTGGGTTTCTGCTGGTGGCCAGGCTTTGACTCGTGATTCTCCTCAACTTTACTGGCTATGCATTACGTTCTTGGCATTTGATGTGTTCTTTGTTGTTATCTGCGTTGCTGTGGCATGTGTCATCGGTATCGCTGTTTGCTGCTGTCTACCATGTATCATTGCACTTTTATATGCAGTGGCCGATCAGGAAGGAGCAACCAAGGATGATATAGAACGACTGCCCAAGTACAATTTTCGGAAAATTGGTGATTTTGAGAAACAAAATGGAGAGATTCAAGAGTCTTTTGGAGGAATAATGACAGAATGTGACACAGACACACCCATTGAACATGTTCTTTCCCTTGAGGATGCTGAGTGCTGCATTTGCCTCTGCCCGTACGATGATGGCATTGAACTGCGCGAACTCCCTTGTCGCCACCATTTCCACTGTGCCTGCATAGACAAGTGGTTGTACATTAATGCCACCTGTCCCCTCTGCAAGTTCAATATTCTGAAGAATGGCAACCAAAGTGGAAGTGAAGAGGCATAAGGAACAACTAAGAACTATTCTACGGATTTTGCCCATAATTTGACGGTTGAAGCGTCTTAATTTGTTCTTTCCTTTGCTTGTTGGGGCGTTGCGTCGGTACAGAAAAAAATGGTACTGTTCGAGAGATCTTCCACCAGTACAGATAGATTTGACGCATGTGAGGGACTATATTATTGTAGGTCTTTATTTTGGGAGCTTTTGCTGTTGTTAATTTTGTGCTGGGAATGTATATGGGTTGGTGGTTCAAATTATTGGGGGAGGTTTGTTGTTTTGTATGGTTTACGTGGAAAAGTTGCGGAATAAATTTTTCTTTGGTAGTAAATATGTTCAGCATGTATGTTTGTGAAAACCTTGATTTTTAACACGCAAAAATTGCTACGATGTTATTATTGAGAAGCCGTGTTTTTTCTTTTCCCCCTTCTTCCTGT

Network for GWHGAAZE031361

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.7	zf-RING_2	228	270	4.80E-11

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	72.697
	SRR3591706	second leaf	29.913
	SRR3591707	mature leaf	43.762
	SRR3591708	Shoot apex	39.196
	SRR3591709	Stem	90.958
	SRR3591710	White floral bud	72.166
	SRR3591711	White flower	83.123
	SRR3591712	Green floral bud	69.134
	SRR3591713	Yellow flower	65.323
SRP173429	SRR8316895	Juvenile bud stage	28.104
	SRR8316896	Juvenile bud stage	44.675
	SRR8316897	Juvenile bud stage	21.565
	SRR8316894	Third green stage	16.578
	SRR8316900	Third green stage	53.928
	SRR8316901	Third green stage	54.804
	SRR8316898	Complete white stage	34.992
	SRR8316899	Complete white stage	87.851
	SRR8316903	Complete white stage	56.152
	SRR8316902	Silver flowering stage	40.768
	SRR8316904	Silver flowering stage	59.480
	SRR8316905	Silver flowering stage	29.585
	SRR8316906	Gold flowering stage	91.540
	SRR8316907	Gold flowering stage	78.547
	SRR8316908	Gold flowering stage	83.921
SRP132670	SRR6706286	Control	48.004
	SRR6706287	Light intensity 50%	46.221
	SRR6706288	Light intensity 20%	49.520
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	48.611
	CNS0095593	Slightly white alabastrum(diploid) 2	58.690
	CNS0095594	Slightly white alabastrum(diploid) 3	46.582
	CNS0095595	Whole white alabastrum(diploid) 2	53.846
	CNS0095596	Whole white alabastrum(diploid) 3	53.973
	CNS0095597	Whole white alabastrum(diploid) 4	56.234
	CNS0095598	Silvery flower (diploied) 1	49.775
	CNS0095599	Silvery flower (diploied) 2	61.771
	CNS0095600	Silvery flower (diploied) 3	104.052
	CNS0095601	Golden flower (diploid) 1	53.420
	CNS0095602	Golden flower (diploid) 2	91.723
	CNS0095603	Golden flower (diploid) 3	81.971
	CNS0095604	Slightly white alabastrum(tetraploid) 1	57.185
	CNS0095605	Slightly white alabastrum(tetraploid) 2	50.299
	CNS0095606	Slightly white alabastrum(tetraploid) 3	60.693
	CNS0095607	Whole white alabastrum(tetraploid) 1	53.843
	CNS0095608	Whole white alabastrum(tetraploid) 2	52.923
	CNS0095609	Whole white alabastrum(tetraploid) 3	48.304
	CNS0095610	Silvery flower (tetraploid) 1	80.104
	CNS0095611	Silvery flower (tetraploid) 2	82.452
	CNS0095612	Silvery flower (tetraploid) 3	93.189
	CNS0095613	Golden flower (tetraploid) 1	54.277
	CNS0095614	Golden flower (tetraploid) 2	72.981
	CNS0095615	Golden flower (tetraploid) 3	80.840
CRA001975	CRR073297	Stem 1	50.923
	CRR073298	Stem 2	50.550
	CRR073299	Stem 3	56.946
	CRR073300	Leaf 1	69.547
	CRR073301	Leaf 2	65.275
	CRR073302	Leaf 3	71.714
	CRR073303	Juvenile bud 1	91.589
	CRR073304	Juvenile bud 2	78.183
	CRR073305	Juvenile bud 3	95.250
	CRR073306	Third green 1	108.446
	CRR073307	Third green 2	122.308
	CRR073308	Third green 3	101.121
	CRR073309	Second white 1	137.553
	CRR073310	Second white 2	106.144
	CRR073311	Second white 3	100.994
	CRR073312	Silver flowering 1	112.084
	CRR073313	Silver flowering 2	123.103
	CRR073314	Silver flowering 3	103.373
	CRR073315	Gold flowering 1	33.889
	CRR073316	Gold flowering 2	36.988
	CRR073317	Gold flowering 3	41.153
	CRR073318	Tawny withering 1	59.212
	CRR073319	Tawny withering 2	56.292
	CRR073320	Tawny withering 3	65.625