Gene detail

Detail information of GWHGAAZE031367

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011091799.1	0	PREDICTED: NAD-dependent malic enzyme 59 kDa isoform, mitochondrial [Sesamum indicum]
COG	YP_007511972.1	1E-142	malate dehydrogenase
Swissprot	tr\|P37225\|MAON_SOLTU	0	NAD-dependent malic enzyme 59 kDa isoform, mitochondrial (Precursor)
trEMBL	tr\|A0A022QW21\|A0A022QW21_ERYGU	0	Malic enzyme {ECO:0000256\|RuleBase:RU003426}
TAIR10	AT4G00570.1	0	NAD-dependent malic enzyme 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	57933133	57944515	+
GWHAAZE00000009	mRNA	57933133	57944515	+
GWHAAZE00000009	exon	57933133	57933261	+
GWHAAZE00000009	exon	57934991	57935087	+
GWHAAZE00000009	exon	57935947	57936065	+
GWHAAZE00000009	exon	57936157	57936324	+
GWHAAZE00000009	exon	57937760	57937888	+
GWHAAZE00000009	exon	57939174	57939198	+
GWHAAZE00000009	exon	57939919	57940022	+
GWHAAZE00000009	exon	57940109	57940192	+
GWHAAZE00000009	exon	57940328	57940434	+
GWHAAZE00000009	exon	57940554	57940647	+
GWHAAZE00000009	exon	57940908	57941021	+
GWHAAZE00000009	exon	57941222	57941287	+
GWHAAZE00000009	exon	57941609	57941681	+
GWHAAZE00000009	exon	57941770	57941856	+
GWHAAZE00000009	exon	57941971	57942025	+
GWHAAZE00000009	exon	57942137	57942208	+
GWHAAZE00000009	exon	57942842	57942904	+
GWHAAZE00000009	exon	57943401	57943515	+
GWHAAZE00000009	exon	57944444	57944515	+
GWHAAZE00000009	CDS	57933133	57933261	+
GWHAAZE00000009	CDS	57934991	57935087	+
GWHAAZE00000009	CDS	57935947	57936065	+
GWHAAZE00000009	CDS	57936157	57936324	+
GWHAAZE00000009	CDS	57937760	57937888	+
GWHAAZE00000009	CDS	57939174	57939198	+
GWHAAZE00000009	CDS	57939919	57940022	+
GWHAAZE00000009	CDS	57940109	57940192	+
GWHAAZE00000009	CDS	57940328	57940434	+
GWHAAZE00000009	CDS	57940554	57940647	+
GWHAAZE00000009	CDS	57940908	57941021	+
GWHAAZE00000009	CDS	57941222	57941287	+
GWHAAZE00000009	CDS	57941609	57941681	+
GWHAAZE00000009	CDS	57941770	57941856	+
GWHAAZE00000009	CDS	57941971	57942025	+
GWHAAZE00000009	CDS	57942137	57942208	+
GWHAAZE00000009	CDS	57942842	57942904	+
GWHAAZE00000009	CDS	57943401	57943515	+
GWHAAZE00000009	CDS	57944444	57944515	+

Transcript Sequence
>GWHTAAZE031403 ATGTGGAGGCTCGCCCGATCTGCGTCGTCGAAGCTCCGACGTGCACGGTGGTTGTCCACTTCTATTCCCGGTCCTTGTATTGTTCACAAGCGTGGTGCTGATATTCTTCACGATCCCTGGTTCAATAAGGATACTGGCTTCCCTTTGACGGAAAGAGACCGACTTGGCCTCCGTGGTCTCCTCCCTCCTCGTGTGATATCATTTGAGCAGCAATATAATCGTTTCATGGAATCATATCGATCGCTAGAGAAACATACTCAAGGTGAACCCGAGGGTGTTGTATCCTTGGCAAAATGGAGGATATTAAATAGACTGCATGACAGGAATGAGACATTATACTACCGGGTCCTCATGGATAATATTAAAGATTTTGCTCCCATAATATATACTCCCACGGTAGGATTGGTATGTCAAAACTATTCAGGTTTGTTTAGACGCCCACGTGGAATGTATTTCAGTGCAAAAGATAAGGGAGAGATGATGTCTATGATCTATAATTGGCCCGCTGATCAGGTTGACATGATTGTGATTACGGATGGTAGTCGTATACTTGGGCTAGGTGATCTTGGAGTTCAGGGAATTGGTATACCGATTGGAAAACTTGATATGTATGTTGCTGCTGCTGGTATCAATCCACAGAGAATACTCCCAGTGATGCTCGACGTTGATTTAGGACTGCGACAACCTAGGTTGGAAGGGGATGAATATCTTTCAATTATTGATGAATTCATGGAAGCTGTTTTTTCACGTTGGCCAAAGGCTATTGTGCAGTTTGAGGATTTTCAATTTAAGTGGGCTTTTGAAACACTGCATCGGTACCGCAAAAGGTTTTGTATGTTCAATGATGACATACAGGGAACTGCTGGTGTTGCCCTAGCTGGACTACTGGGAACTGTAAGAGCACAAGGTCGGCCACTGACAGACTTTGCAAACCAAAAGATAGTTGTAGTTGGAGCTGGAAGTGCAGGGCTGGGTGTTCTTGAAACCGCCTTACAGGCCGTTTCGCGATTGGCGGGACCAGCAGCGGATAATCACTTTTTCCTACTCGATAAAAATGGTCTCATCACAAAAGAGAGGAGGGATATTGATCCAGCAGCTGCTCCATTTGCTAAAGCCCCAGGGGAGATTGAGGGATTGGGACTGAAGGAAGGAGCTAATCTCATTGAAGTGGTGAAAAAGGTGAAGCCTCATGTGCTCCTTGGTTTGTCTGGAGTTGGTGGTATTTTCAATGAGGAGGTTCTTAAAGCCATGCAAGCGTCGGATTCCACCAAACCTGCTGTTTTTGCCATGTCAAATCCCACAATGAATGCTGAATGCACTGCTGCTGAGGCATTCAAGCATGCTGGTGAAGAAATAGTTTTTGCAAGTGGGAGCCCGTTTGAAAATGTTGAACTTGGTAATGGGAAAGTCGGCCATGTAAATCAAGCAAACAACATGTACCTGTTCCCTGGGATTGGGTTGGGAACTCTTCTCTCTGGTGCTCATTTTATTTCAGATGGAATGTTGCAAGCAGCAGCTGAATGCCTTGCTTCTTATATGACAGACGAAGAAATTCAACAGGGCATCTTGTATCCTTCTATTGATAGCATTCGAGACATTACAGCTGAGGTTGGAGCTGCTGTTGTTCAAGCAGCTATTGATGAAGACCTGGCAGAAGGACGTGGTGATGTAGGACCAAAAGAGCTCGCCCTTATGTCGAAAGAGGAGACAGTGGAGTATGTGAAGCGCAACATGTGGTATCCTATTTACAGCCCTCTTGTTCATGAGAACTGA

Network for GWHGAAZE031367

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00390.20	malic	106	274	1.40E-64
PF03949.16	Malic_M	284	546	7.00E-89

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00028	E1.1.1.39	Metabolic pathways	map01100
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Pyruvate metabolism	map00620
		Carbon fixation in photosynthetic organisms	map00710

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0051287	molecular_function	NAD binding
GO:0004470	molecular_function	malic enzyme activity
GO:0004471	molecular_function	malate dehydrogenase (decarboxylating) (NAD+) activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	36.531
	SRR3591706	second leaf	2.677
	SRR3591707	mature leaf	2.877
	SRR3591708	Shoot apex	21.007
	SRR3591709	Stem	38.531
	SRR3591710	White floral bud	7.833
	SRR3591711	White flower	20.692
	SRR3591712	Green floral bud	9.644
	SRR3591713	Yellow flower	20.321
SRP173429	SRR8316895	Juvenile bud stage	15.129
	SRR8316896	Juvenile bud stage	20.226
	SRR8316897	Juvenile bud stage	10.244
	SRR8316894	Third green stage	10.061
	SRR8316900	Third green stage	27.958
	SRR8316901	Third green stage	25.519
	SRR8316898	Complete white stage	3.859
	SRR8316899	Complete white stage	15.094
	SRR8316903	Complete white stage	5.403
	SRR8316902	Silver flowering stage	10.972
	SRR8316904	Silver flowering stage	9.297
	SRR8316905	Silver flowering stage	5.277
	SRR8316906	Gold flowering stage	10.115
	SRR8316907	Gold flowering stage	22.357
	SRR8316908	Gold flowering stage	14.600
SRP132670	SRR6706286	Control	12.947
	SRR6706287	Light intensity 50%	12.738
	SRR6706288	Light intensity 20%	12.029
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	27.617
	CNS0095593	Slightly white alabastrum(diploid) 2	27.610
	CNS0095594	Slightly white alabastrum(diploid) 3	22.407
	CNS0095595	Whole white alabastrum(diploid) 2	26.283
	CNS0095596	Whole white alabastrum(diploid) 3	32.349
	CNS0095597	Whole white alabastrum(diploid) 4	26.368
	CNS0095598	Silvery flower (diploied) 1	17.376
	CNS0095599	Silvery flower (diploied) 2	19.659
	CNS0095600	Silvery flower (diploied) 3	8.316
	CNS0095601	Golden flower (diploid) 1	14.457
	CNS0095602	Golden flower (diploid) 2	8.267
	CNS0095603	Golden flower (diploid) 3	7.380
	CNS0095604	Slightly white alabastrum(tetraploid) 1	26.557
	CNS0095605	Slightly white alabastrum(tetraploid) 2	29.935
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.802
	CNS0095607	Whole white alabastrum(tetraploid) 1	28.675
	CNS0095608	Whole white alabastrum(tetraploid) 2	26.123
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.906
	CNS0095610	Silvery flower (tetraploid) 1	14.979
	CNS0095611	Silvery flower (tetraploid) 2	8.587
	CNS0095612	Silvery flower (tetraploid) 3	3.910
	CNS0095613	Golden flower (tetraploid) 1	5.613
	CNS0095614	Golden flower (tetraploid) 2	5.946
	CNS0095615	Golden flower (tetraploid) 3	1.158
CRA001975	CRR073297	Stem 1	16.702
	CRR073298	Stem 2	17.502
	CRR073299	Stem 3	15.717
	CRR073300	Leaf 1	17.533
	CRR073301	Leaf 2	19.066
	CRR073302	Leaf 3	13.181
	CRR073303	Juvenile bud 1	13.169
	CRR073304	Juvenile bud 2	6.668
	CRR073305	Juvenile bud 3	10.887
	CRR073306	Third green 1	3.924
	CRR073307	Third green 2	2.131
	CRR073308	Third green 3	3.651
	CRR073309	Second white 1	1.318
	CRR073310	Second white 2	1.045
	CRR073311	Second white 3	0.604
	CRR073312	Silver flowering 1	1.236
	CRR073313	Silver flowering 2	1.331
	CRR073314	Silver flowering 3	1.049
	CRR073315	Gold flowering 1	1.422
	CRR073316	Gold flowering 2	1.644
	CRR073317	Gold flowering 3	1.268
	CRR073318	Tawny withering 1	10.115
	CRR073319	Tawny withering 2	12.740
	CRR073320	Tawny withering 3	6.899