Gene detail

Detail information of GWHGAAZE031379

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010523735.1	2.0143E-121	PREDICTED: transcription repressor MYB6 [Tarenaya hassleriana]
Swissprot	tr\|Q8GWP0\|MYB39_ARATH	7E-61	Transcription factor MYB39
trEMBL	tr\|A0A067K0R8\|A0A067K0R8_JATCU	7E-119	Uncharacterized protein {ECO:0000313\|EMBL:KDP28653.1}
TAIR10	AT3G61250.1	4E-72	myb domain protein 17

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	58137245	58140568	+
GWHAAZE00000009	mRNA	58137245	58140568	+
GWHAAZE00000009	exon	58137245	58137380	+
GWHAAZE00000009	exon	58138172	58138301	+
GWHAAZE00000009	exon	58140022	58140568	+
GWHAAZE00000009	CDS	58137245	58137380	+
GWHAAZE00000009	CDS	58138172	58138301	+
GWHAAZE00000009	CDS	58140022	58140568	+

Transcript Sequence
>GWHTAAZE031415 ATGGGGAGAAGAGCATGCTGCGAAAAGAAAGGGATAAAGAAAGGGCCATGGACTCCTGAAGAAGACGACATTCTTATTCAATACATCAACAACAACTCTGGTCATACTAGTTGGCGCTCTCTCCCTAAGCTTGCAGGGCTTCTTAGGTGTGGGAAAAGTTGCAGGCTGCGGTGGACAAACTATCTGAGGCCAGACATAAAGCGGGGTCATTTCACTCCTCAAGAAGAGAAGTTAGTCATACAGTTGCATGCCATTCTTGGCAACAGATGGACAGCAATTGCTTCGCAAATACCTGGAAGAACAGATAATGAGATAAAGAACTTGTGGAACATCCATCTAAAGAAGCGTCTGCTTTCCATGGGTATTGACCCGTTAACCCATGAGACCATCACCACCGGGTCGGCGCAGAGACCGTTAGCCTCACCTACCACCCGCCACATGGCACAATGGGAGAGTGCTAGGCTGGAAGCCGAGGCTCGTCTTTCAAGAGAATCACTACTACTACCACCCCCAACAGCTCACACGCCTACCAGTACTGACTATTTCCTACGCATATGGAACTCCGAGGTCGGAGAATCATTCCGTAAGGTTAACAATGAGAACAAAGATGCTTCTTCATCGACAAAATGTACGATTGATAGATGGGATTCATCAAGCTCGAGTGAGTTGGAAGATTCATCAGATGCCGCTTTAGACTTGCTTCTTGATTTCCCAGAAAACAATGACATGGGCTTCTTGGAAGAAAATGTTGGGAACAATTCCACAAATCCTTCTTCCATTTTAACTGAGAGCTCTTTAAATGGCTCCCTCTAG

Network for GWHGAAZE031379

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	14	62	5.10E-12
PF00249.32	Myb_DNA-binding	68	110	9.30E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.829
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	1.358
	SRR3591711	White flower	0.808
	SRR3591712	Green floral bud	1.172
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.605
	SRR8316896	Juvenile bud stage	1.127
	SRR8316897	Juvenile bud stage	1.367
	SRR8316894	Third green stage	1.429
	SRR8316900	Third green stage	6.304
	SRR8316901	Third green stage	4.967
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.356
	SRR8316903	Complete white stage	0.026
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.041
	SRR8316905	Silver flowering stage	0.070
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	1.930
	SRR6706287	Light intensity 50%	2.178
	SRR6706288	Light intensity 20%	2.896
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.621
	CNS0095593	Slightly white alabastrum(diploid) 2	1.299
	CNS0095594	Slightly white alabastrum(diploid) 3	0.704
	CNS0095595	Whole white alabastrum(diploid) 2	1.161
	CNS0095596	Whole white alabastrum(diploid) 3	1.581
	CNS0095597	Whole white alabastrum(diploid) 4	0.413
	CNS0095598	Silvery flower (diploied) 1	0.311
	CNS0095599	Silvery flower (diploied) 2	0.059
	CNS0095600	Silvery flower (diploied) 3	0.090
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.556
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.125
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.256
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.474
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.058
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.509
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.303
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.235
CRA001975	CRR073297	Stem 1	2.101
	CRR073298	Stem 2	2.723
	CRR073299	Stem 3	2.458
	CRR073300	Leaf 1	3.683
	CRR073301	Leaf 2	2.931
	CRR073302	Leaf 3	7.704
	CRR073303	Juvenile bud 1	1.198
	CRR073304	Juvenile bud 2	0.412
	CRR073305	Juvenile bud 3	0.214
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.745
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.118
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.423
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000