Detail information of GWHGAAZE031393


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007218188.10hypothetical protein PRUPE_ppa007693mg [Prunus persica]
COGYP_003324485.13E-13Kelch repeat-containing protein
Swissprottr|Q9M2C9|SKIP4_ARATH2E-127F-box/kelch-repeat protein SKIP4
trEMBLtr|M5X005|M5X005_PRUPE0Uncharacterized protein {ECO:0000313|EMBL:EMJ19387.1}
TAIR10AT3G61350.17E-101SKP1 interacting partner 4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5830615258309490-
GWHAAZE00000009mRNA5830615258309490-
GWHAAZE00000009exon5830938258309490-
GWHAAZE00000009exon5830744258307938-
GWHAAZE00000009exon5830615258306749-
GWHAAZE00000009five_prime_UTR5830938258309490-
GWHAAZE00000009five_prime_UTR5830791858307938-
GWHAAZE00000009CDS5830744258307917-
GWHAAZE00000009CDS5830615258306749-
Transcript Sequence

Network for GWHGAAZE031393

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box20574.60E-06
PF01344.26Kelch_11111567.00E-12
PF01344.26Kelch_11582011.30E-07
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf19.508
SRR3591706second leaf8.494
SRR3591707mature leaf8.919
SRR3591708Shoot apex16.013
SRR3591709Stem27.465
SRR3591710White floral bud20.583
SRR3591711White flower20.228
SRR3591712Green floral bud24.186
SRR3591713Yellow flower25.181
SRP173429 SRR8316895Juvenile bud stage 14.845
SRR8316896Juvenile bud stage 21.170
SRR8316897Juvenile bud stage 9.149
SRR8316894Third green stage 7.447
SRR8316900Third green stage 22.837
SRR8316901Third green stage 23.020
SRR8316898Complete white stage 6.598
SRR8316899Complete white stage 20.526
SRR8316903Complete white stage 9.539
SRR8316902Silver flowering stage6.106
SRR8316904Silver flowering stage8.244
SRR8316905Silver flowering stage3.531
SRR8316906Gold flowering stage 14.806
SRR8316907Gold flowering stage 13.297
SRR8316908Gold flowering stage 12.267
SRP132670SRR6706286Control14.278
SRR6706287Light intensity 50%15.272
SRR6706288Light intensity 20%16.861
CNP0000432CNS0095592Slightly white alabastrum(diploid) 130.506
CNS0095593Slightly white alabastrum(diploid) 226.776
CNS0095594Slightly white alabastrum(diploid) 329.771
CNS0095595Whole white alabastrum(diploid) 226.658
CNS0095596Whole white alabastrum(diploid) 327.140
CNS0095597Whole white alabastrum(diploid) 429.914
CNS0095598Silvery flower (diploied) 120.210
CNS0095599Silvery flower (diploied) 213.762
CNS0095600Silvery flower (diploied) 317.808
CNS0095601Golden flower (diploid) 116.891
CNS0095602Golden flower (diploid) 218.448
CNS0095603Golden flower (diploid) 320.053
CNS0095604Slightly white alabastrum(tetraploid) 129.390
CNS0095605Slightly white alabastrum(tetraploid) 233.468
CNS0095606Slightly white alabastrum(tetraploid) 325.139
CNS0095607Whole white alabastrum(tetraploid) 127.933
CNS0095608Whole white alabastrum(tetraploid) 226.043
CNS0095609Whole white alabastrum(tetraploid) 328.064
CNS0095610Silvery flower (tetraploid) 125.639
CNS0095611Silvery flower (tetraploid) 224.805
CNS0095612Silvery flower (tetraploid) 317.903
CNS0095613Golden flower (tetraploid) 122.532
CNS0095614Golden flower (tetraploid) 222.824
CNS0095615Golden flower (tetraploid) 322.891
CRA001975CRR073297Stem 125.293
CRR073298Stem 222.662
CRR073299Stem 322.989
CRR073300Leaf 128.949
CRR073301Leaf 223.858
CRR073302Leaf 327.252
CRR073303Juvenile bud 124.570
CRR073304Juvenile bud 216.158
CRR073305Juvenile bud 316.872
CRR073306Third green 17.383
CRR073307Third green 29.642
CRR073308Third green 37.375
CRR073309Second white 17.747
CRR073310Second white 211.798
CRR073311Second white 39.521
CRR073312Silver flowering 112.323
CRR073313Silver flowering 214.114
CRR073314Silver flowering 39.887
CRR073315Gold flowering 114.449
CRR073316Gold flowering 212.095
CRR073317Gold flowering 39.959
CRR073318Tawny withering 119.475
CRR073319Tawny withering 223.279
CRR073320Tawny withering 316.845