Gene detail

Detail information of GWHGAAZE031395

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009415274.1	1.2063E-120	PREDICTED: protein farnesyltransferase subunit beta-like isoform X2 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q04903\|FNTB_PEA	5E-114	Protein farnesyltransferase subunit beta
trEMBL	tr\|A5AM50\|A5AM50_VITVI	3E-125	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN71455.1}
TAIR10	AT5G40280.1	2E-66	Prenyltransferase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	58330428	58343203	+
GWHAAZE00000009	mRNA	58330428	58343203	+
GWHAAZE00000009	exon	58330428	58330472	+
GWHAAZE00000009	exon	58334401	58334567	+
GWHAAZE00000009	exon	58334684	58334770	+
GWHAAZE00000009	exon	58335648	58335753	+
GWHAAZE00000009	exon	58339719	58339783	+
GWHAAZE00000009	exon	58340520	58340576	+
GWHAAZE00000009	exon	58340883	58340985	+
GWHAAZE00000009	exon	58341227	58341313	+
GWHAAZE00000009	exon	58341411	58341504	+
GWHAAZE00000009	exon	58341895	58342022	+
GWHAAZE00000009	exon	58342964	58343203	+
GWHAAZE00000009	CDS	58330428	58330472	+
GWHAAZE00000009	CDS	58334401	58334567	+
GWHAAZE00000009	CDS	58334684	58334770	+
GWHAAZE00000009	CDS	58335648	58335753	+
GWHAAZE00000009	CDS	58339719	58339783	+
GWHAAZE00000009	CDS	58340520	58340576	+
GWHAAZE00000009	CDS	58340883	58340985	+
GWHAAZE00000009	CDS	58341227	58341313	+
GWHAAZE00000009	CDS	58341411	58341504	+
GWHAAZE00000009	CDS	58341895	58342022	+
GWHAAZE00000009	CDS	58342964	58343203	+

Transcript Sequence
>GWHTAAZE031431 ATGGCTGACCTTTGGCGCGGAGAGATGAGCGGGAGAGCTACGCAGTCTAAAGAGGGAGGTCAACAGCACATCACGGTGGTGAATATTCGATCGGCGATGAGTATGGATTCGTCATTGACGGTTACTGAGGTAGAGCAAAGGAACTTAGAGTCTCAAGTTTTTCACATCTACCATCTCTTCACAGATCTTCCCCACAACGCCCAAACTGTCATGTTGGAGCTTCAACGTGATATGCACATAGAGTTTCTCACCAGAGGTCTTCGACAACTCGCTCCCTCCTTTGCCGTATTGGATGCCAGTCGACCCTGGCTTTGCTACTGGATCCTTCACTCAGTTGCTTTATTGGGAGAATATGTTGATGCTGAACTGGAAAATAATGCCATTGACTTTCTAACCCGTTGCCAGGTTGCAAGTATTCTGAACATTTTGGATGATGTGCTTGTTCACAATGTTGGAAACTATATTCTAAGTTGTCAGACCTATGAAGGTGGCATTGCTGGTGAACCAGGTTCCGAAGCTCATGGTGGAGCCCGGAGATCTGATGATTTCTTCAATAGGTACACCTTTTGTGGATTGTCCACGATGATTTTGATCAATGAGGCTAATCGTTTGGACTTGGCTGGTTTAACCGACTGGATGGTATTTAGACAAGGACTGGAGGGTGGCTTCCAAGGCAGAACAAATAAATTGGTTGATGGTTGCTACTCCTTTTGGCAGGGAGGAGCGTCTGCATTGATACAAAGGTTACATGTACCTGGTGCTGGAGAAGACAACTGCAGTATATATGGGACCAAAAATTCTGGAGAGGAAGAACAAAAATATGGTCCTGTTCGAGCCACTCTACTTAGTGTTGGCTCTAATTTTATCAGAAGAAGTACACAAATGGGACCCCTTTTCCATAACATTGCTTTGCAGCAATACATCCTTTTATGCTCTCAGGTGGAGGGAGGGTTCAGGGACAAACCAGGGAAGCAGAGAGACCATTATCACACTTGCTATTGCCTAAGTGGCCTATCGGCGTGCCAATATAGCTATTCAGATGATGCTGACTCTCCAGCTTCGCCTAGGGCAATATTGGGACCTTATTCCAATTTACTGGAACCAATTCACCCTCTCTATAATGTTGTCCTCGAGCGCTACAATGAAGCACACCAGTTCTTCTCGAGCTCCAACGGCTAA

Network for GWHGAAZE031395

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00432.22	Prenyltrans	151	198	3.20E-06
PF00432.22	Prenyltrans	207	242	5.70E-05
PF00432.22	Prenyltrans	304	341	5.60E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05954	FNTB	Biosynthesis of secondary metabolites	map01110
K05954	FNTB	Terpenoid backbone biosynthesis	map00900

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.321
	SRR3591706	second leaf	7.097
	SRR3591707	mature leaf	9.566
	SRR3591708	Shoot apex	8.881
	SRR3591709	Stem	12.180
	SRR3591710	White floral bud	11.689
	SRR3591711	White flower	14.123
	SRR3591712	Green floral bud	8.582
	SRR3591713	Yellow flower	12.340
SRP173429	SRR8316895	Juvenile bud stage	6.875
	SRR8316896	Juvenile bud stage	10.578
	SRR8316897	Juvenile bud stage	3.860
	SRR8316894	Third green stage	4.257
	SRR8316900	Third green stage	11.673
	SRR8316901	Third green stage	9.415
	SRR8316898	Complete white stage	3.705
	SRR8316899	Complete white stage	13.372
	SRR8316903	Complete white stage	6.139
	SRR8316902	Silver flowering stage	4.896
	SRR8316904	Silver flowering stage	5.420
	SRR8316905	Silver flowering stage	3.274
	SRR8316906	Gold flowering stage	13.592
	SRR8316907	Gold flowering stage	11.677
	SRR8316908	Gold flowering stage	12.899
SRP132670	SRR6706286	Control	10.162
	SRR6706287	Light intensity 50%	10.883
	SRR6706288	Light intensity 20%	11.456
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.393
	CNS0095593	Slightly white alabastrum(diploid) 2	6.819
	CNS0095594	Slightly white alabastrum(diploid) 3	10.936
	CNS0095595	Whole white alabastrum(diploid) 2	8.629
	CNS0095596	Whole white alabastrum(diploid) 3	6.391
	CNS0095597	Whole white alabastrum(diploid) 4	6.614
	CNS0095598	Silvery flower (diploied) 1	11.836
	CNS0095599	Silvery flower (diploied) 2	10.598
	CNS0095600	Silvery flower (diploied) 3	10.255
	CNS0095601	Golden flower (diploid) 1	9.178
	CNS0095602	Golden flower (diploid) 2	9.598
	CNS0095603	Golden flower (diploid) 3	9.322
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.009
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.318
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.230
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.409
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.852
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.762
	CNS0095610	Silvery flower (tetraploid) 1	16.008
	CNS0095611	Silvery flower (tetraploid) 2	11.283
	CNS0095612	Silvery flower (tetraploid) 3	11.863
	CNS0095613	Golden flower (tetraploid) 1	14.087
	CNS0095614	Golden flower (tetraploid) 2	16.112
	CNS0095615	Golden flower (tetraploid) 3	11.570
CRA001975	CRR073297	Stem 1	15.344
	CRR073298	Stem 2	12.835
	CRR073299	Stem 3	12.058
	CRR073300	Leaf 1	14.081
	CRR073301	Leaf 2	13.901
	CRR073302	Leaf 3	9.645
	CRR073303	Juvenile bud 1	12.291
	CRR073304	Juvenile bud 2	7.986
	CRR073305	Juvenile bud 3	12.757
	CRR073306	Third green 1	3.559
	CRR073307	Third green 2	3.879
	CRR073308	Third green 3	3.713
	CRR073309	Second white 1	7.870
	CRR073310	Second white 2	6.870
	CRR073311	Second white 3	7.423
	CRR073312	Silver flowering 1	7.202
	CRR073313	Silver flowering 2	7.098
	CRR073314	Silver flowering 3	7.941
	CRR073315	Gold flowering 1	8.168
	CRR073316	Gold flowering 2	11.413
	CRR073317	Gold flowering 3	6.449
	CRR073318	Tawny withering 1	16.837
	CRR073319	Tawny withering 2	21.395
	CRR073320	Tawny withering 3	14.556