Gene detail

Detail information of GWHGAAZE031400

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDO86171.1	0	hypothetical protein CISIN_1g002719mg [Citrus sinensis]
COG	YP_001958461.1	3E-25	hypothetical protein Aasi_1443
Swissprot	tr\|Q8GUH1\|PUB33_ARATH	0	Serine/threonine-protein kinase
trEMBL	tr\|A0A067HEC7\|A0A067HEC7_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO86171.1}
TAIR10	AT2G45910.1	0	U-box domain-containing protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	58406133	58412006	+
GWHAAZE00000009	mRNA	58406133	58412006	+
GWHAAZE00000009	exon	58406133	58406227	+
GWHAAZE00000009	exon	58406928	58407032	+
GWHAAZE00000009	exon	58407250	58407670	+
GWHAAZE00000009	exon	58407848	58407985	+
GWHAAZE00000009	exon	58408401	58408931	+
GWHAAZE00000009	exon	58409628	58410386	+
GWHAAZE00000009	exon	58411824	58412006	+
GWHAAZE00000009	CDS	58406133	58406227	+
GWHAAZE00000009	CDS	58406928	58407032	+
GWHAAZE00000009	CDS	58407250	58407670	+
GWHAAZE00000009	CDS	58407848	58407985	+
GWHAAZE00000009	CDS	58408401	58408931	+
GWHAAZE00000009	CDS	58409628	58410386	+
GWHAAZE00000009	CDS	58411824	58412006	+

Transcript Sequence
>GWHTAAZE031436 ATGGACTCTATTGAGAAGGGCATTTTGGAACTCATCTCTCTGCATGATATCAAAAGGCTTGTGATCGGAGCTGCTGCGGACAAACATTATTCAAAGAAAATGATGGAGCCTAAGTCCAAGAAAGCCATCAATGTGCGCCGAGAAGCACCTGCTTCGTGCCATATTTGGTTTATCTGCAAAGGGAACCTCATCTACACAAGGGAGGGTAGATTAGGTGGAATTGATGTGGGATTTGCCTTTCTATCACTTCAAGCAACTCCAAACACCCCGAGATCGAGGTCTGTTTCAGAAGGGCAGAATGGTCAACTAAGGCTCGCTATTCCATCTCCAGATTATCAGAGAGTAGGTTCAGCCAATCCTTGGACAAGAACTCCAGCTTTGTTTTCACCAGATGGCACTGGAGGGGTAACTCCCCACAGCACGTTAATTGCAGAGGAGGGCTCTTATGAATCATATGGGATATCAAGGAGGAGACGTGTTTTAACATCTCCAAGTGAAGTGGTTGATTATTCGGTTCTAATCCCTTCTCTTGGCGCTGATGAAAGTAAAAATGATTCGGAGTTCAGTGCGCTATCTCATTCCAAGGAGATTATTCGCAATTTATCTCCTCCCAGCGTATTAGAAGGTTTTTTGAAGGATGAAGTCTACGATCAGATAGCACAAGCAATGGCAGAGGCTGATAATTCCAAGCGTGAAGCATTTGAAGAGTCAATCAAACGTAGAAAAGCTGAAAAGGCTGCCATTGATGCTATTCGCAGAGCCAAAGCATCAGAAGCATCATATGCTGAGGAACTGAGACAACGGAAAGAAGTAGAGGAGGCACTAGCAAGAGAAAAAGAAGGGTTTGAAAAGATTAAGCAGCAGCTAAATGAAGTCATGGAAGAACTCTGGGTTGCCCAGGAACAGAAATCAAATCTGGACCGCCAAATTGCGAATTCTGATCAGACGGTACAGGAGTTGGAACAAAAGATTTTCTCTGCTGTTGAGCTTTTGCAAAAGTACAAGAAGGAAAGAGATGAATTGCAGGTGGAGAGGGACAATGCACTCAAAGTAGCTGAGGAGCTGAGGAGAAAACAAGCACAAGAGGGCTTGAGTACCCATGTTCCTCAGTTCTTTTCCGAGTTCTCCTACTCTGAAATTGAAGATGCAACTTACAATTTTGATCTGGACTTGAAGATTGGGGAAGGGGGTTATGGAAGTATTTTTAGAGGTCTTCTTCGTCACACTCCGGTGGCTGTAAAGATGCTGAACTCTCATAGCTTACAAGGACCTTCAGAGTTTCAACAGGAGGTCGCTATCTTGAGTAAGTTGAGGCATCCAAACCTGGTCACTCTCATAGGGGCTTGCCCAGAAGCTTGGATTCTTGTCTACGAGTATCTTCCCAATGGAAGCCTCGAAGATCGGCTCAACTGCAAGGACAACACTCCCCCACTATCCTGGCAAACTCGAATCCGTATTGCCTCTGAGCTCTGTTCTGTTCTAGTTTTCCTTCATTCGTGCAATCCTCACAGCATAGTACACGGTGATTTAAAACCTGGTAATATTCTTCTCGATGCCAACTACGTTAGCAAACTCAGCGACTTTGGAATGTGCCGTGTACTCAAAGACGATTTTACAGTCAACAACACGACGCGTTGTTGTAGAACTGACCCGAAGGGTACTTTTGCATATATGGATCCGGATTTCTTTGCTACTGGAGAGCTTACTCCAAAATCCGATGTGTATTCATTTGGCATTATATTGTTAAGATTATTGACTGGAAGATCTGCTGTGCGGATAACAAATGAAGTGCAATCAGCGTTGGATAGAGGGAATTTGAAAGAGTTGTTGGATCCTACGGCTGGGGACTGGCCATTTGTGCAGGCTAAACAGTTGGCTCACTTAGCAATGAGTTGCTGTGCGATGAACCGAAGGAACCGGCCGGACTTTGCATCAGATGTGTGGAGGGTGCTTGAACCAATGAGAGTTTCATGCGGGGCCTCGTCGTTCCGAGTGGGTTCAGAGGAGCGTTGCCAGATTCCACCTTATTTTGTTTGCCCCATCTTTCAGGAGATTATGCTAGATCCGGTAGTAGCAGCGGACGGATATACATACGAAGCAGAGGCTTTAAAAGGATGGATGGACAGTGGGCACGATACTTCGCCCATGACAAACGCCAAGCTCGCAAACTCCAATGTTTTGCCCAACCGCGCACTTCGTTCTTCTATTCAGGAGTGGCTACAACAGCCTTAG

Network for GWHGAAZE031400

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0290

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	389	644	6.80E-40
PF04564.16	U-box	673	742	3.10E-20

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-IXb

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0016567	biological_process	protein ubiquitination
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004842	molecular_function	ubiquitin-protein transferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.060
	SRR3591706	second leaf	8.157
	SRR3591707	mature leaf	8.268
	SRR3591708	Shoot apex	17.250
	SRR3591709	Stem	29.581
	SRR3591710	White floral bud	14.462
	SRR3591711	White flower	15.646
	SRR3591712	Green floral bud	16.720
	SRR3591713	Yellow flower	14.605
SRP173429	SRR8316895	Juvenile bud stage	11.105
	SRR8316896	Juvenile bud stage	13.232
	SRR8316897	Juvenile bud stage	4.782
	SRR8316894	Third green stage	5.227
	SRR8316900	Third green stage	15.633
	SRR8316901	Third green stage	15.022
	SRR8316898	Complete white stage	5.607
	SRR8316899	Complete white stage	27.166
	SRR8316903	Complete white stage	8.002
	SRR8316902	Silver flowering stage	4.686
	SRR8316904	Silver flowering stage	6.598
	SRR8316905	Silver flowering stage	3.288
	SRR8316906	Gold flowering stage	11.327
	SRR8316907	Gold flowering stage	11.786
	SRR8316908	Gold flowering stage	13.673
SRP132670	SRR6706286	Control	13.050
	SRR6706287	Light intensity 50%	13.553
	SRR6706288	Light intensity 20%	14.636
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.298
	CNS0095593	Slightly white alabastrum(diploid) 2	12.217
	CNS0095594	Slightly white alabastrum(diploid) 3	7.990
	CNS0095595	Whole white alabastrum(diploid) 2	7.077
	CNS0095596	Whole white alabastrum(diploid) 3	6.766
	CNS0095597	Whole white alabastrum(diploid) 4	8.803
	CNS0095598	Silvery flower (diploied) 1	13.783
	CNS0095599	Silvery flower (diploied) 2	14.505
	CNS0095600	Silvery flower (diploied) 3	17.698
	CNS0095601	Golden flower (diploid) 1	17.313
	CNS0095602	Golden flower (diploid) 2	19.636
	CNS0095603	Golden flower (diploid) 3	20.068
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.505
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.135
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.904
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.804
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.015
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.966
	CNS0095610	Silvery flower (tetraploid) 1	16.225
	CNS0095611	Silvery flower (tetraploid) 2	20.759
	CNS0095612	Silvery flower (tetraploid) 3	11.988
	CNS0095613	Golden flower (tetraploid) 1	9.327
	CNS0095614	Golden flower (tetraploid) 2	17.512
	CNS0095615	Golden flower (tetraploid) 3	16.664
CRA001975	CRR073297	Stem 1	19.182
	CRR073298	Stem 2	15.753
	CRR073299	Stem 3	17.686
	CRR073300	Leaf 1	19.956
	CRR073301	Leaf 2	18.637
	CRR073302	Leaf 3	14.455
	CRR073303	Juvenile bud 1	18.404
	CRR073304	Juvenile bud 2	10.104
	CRR073305	Juvenile bud 3	21.400
	CRR073306	Third green 1	1.852
	CRR073307	Third green 2	2.780
	CRR073308	Third green 3	3.509
	CRR073309	Second white 1	4.065
	CRR073310	Second white 2	3.109
	CRR073311	Second white 3	3.243
	CRR073312	Silver flowering 1	3.855
	CRR073313	Silver flowering 2	4.059
	CRR073314	Silver flowering 3	3.533
	CRR073315	Gold flowering 1	10.736
	CRR073316	Gold flowering 2	11.411
	CRR073317	Gold flowering 3	10.877
	CRR073318	Tawny withering 1	23.004
	CRR073319	Tawny withering 2	14.026
	CRR073320	Tawny withering 3	21.906