Gene detail

Detail information of GWHGAAZE031408

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002276013.1	0	PREDICTED: bifunctional L-3-cyanoalanine synthase/cysteine synthase 1, mitochondrial [Vitis vinifera]
COG	YP_591171.1	2E-107	cysteine synthase
Swissprot	tr\|Q9FS29\|CAS2_SOLTU	0	Bifunctional L-3-cyanoalanine synthase/cysteine synthase 2, mitochondrial (Precursor)
trEMBL	tr\|D7UCD0\|D7UCD0_VITVI	0	Cysteine synthase {ECO:0000256\|RuleBase:RU003985}
TAIR10	AT3G61440.1	3E-136	cysteine synthase C1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	58491841	58495397	+
GWHAAZE00000009	mRNA	58491841	58495397	+
GWHAAZE00000009	exon	58491841	58491872	+
GWHAAZE00000009	exon	58492532	58492589	+
GWHAAZE00000009	exon	58492702	58492965	+
GWHAAZE00000009	exon	58493954	58494091	+
GWHAAZE00000009	exon	58494213	58494264	+
GWHAAZE00000009	exon	58494399	58494478	+
GWHAAZE00000009	exon	58494569	58494628	+
GWHAAZE00000009	exon	58495096	58495176	+
GWHAAZE00000009	exon	58495299	58495397	+
GWHAAZE00000009	CDS	58491841	58491872	+
GWHAAZE00000009	CDS	58492532	58492589	+
GWHAAZE00000009	CDS	58492702	58492965	+
GWHAAZE00000009	CDS	58493954	58494091	+
GWHAAZE00000009	CDS	58494213	58494264	+
GWHAAZE00000009	CDS	58494399	58494478	+
GWHAAZE00000009	CDS	58494569	58494628	+
GWHAAZE00000009	CDS	58495096	58495176	+
GWHAAZE00000009	CDS	58495299	58495397	+

Transcript Sequence
>GWHTAAZE031444 ATGTTTCAACCTACTTCCAGCATCAAAGACAGACCAGCATTGGCCATGATCAAAGATGCCGAAGAGAAAAACTTAATTACACCAGGGAAGACGGTATTGATCGAGCCGACATCAGGAAATATGGGGATAAGTATGGCATTTATAGCGGCCATGAAAGGTTACAAGATGGTTCTAACTATGCCTTCCTATACAAGTCTTGAAAGAAGAGTGACCATGAGAGCATTTGGAGCCGATTTAATCCTCACTGACCCAACCAAGGGAATGGGTGGAACTGTTAAGAAAGCTGATCAACTTTTGGAATCCACTCCTGATGCTTTTATGCTTCAACAATTTTCTAATCCTGCCAATACTAAGGTGCATTTCGATACAACTGGTCCCGAGATATGGGAGGATACTAACGGGAAAGTCGATATCTTCATAATGGGAATAGGAAGTGGAGGCACTGTCTCTGGTGTAGGACAATATCTCAAGTCCAAAAATCCGGATGTTAAGATCTATGGACTCGAGCCTACCGAAAGCAATGTACTAAATGGTGGTAAACCCGGACCTCATCAAATAACTGGAAACGGGGTGGGGTTCAAGCCGGATATATTAGACATGGATGTAATGGAAGAGGTTCTCATGGTTTCTAGTGAAGATGCGGTGAATATGGCAAGGCAGTTGGCACTGAAGGAGGGGCTTATGGTCGGAATATCGTCAGGAGCTAATACAGTTGCAGCACTTAGACTCGCTAGGCGCCCAGAGAACAAAGGCAAACTTATTGTGACTATTCATGCGAGCTTCGGCGAGAGGTACTTGTCATCGGTGCTGTTTGAAGAGCTGAGGAAAGAGGCTGAAAATATGCAGCCAGTTCCAGTCGATTAA

Network for GWHGAAZE031408

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00291.26	PALP	2	258	2.80E-57

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13034	ATCYSC1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Sulfur metabolism	map00920
		Cysteine and methionine metabolism	map00270
		Cyanoamino acid metabolism	map00460

Gene Ontology

GO term	Ontology	Name
GO:0006535	biological_process	cysteine biosynthetic process from serine
GO:0004124	molecular_function	cysteine synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	106.151
	SRR3591706	second leaf	75.438
	SRR3591707	mature leaf	158.598
	SRR3591708	Shoot apex	66.550
	SRR3591709	Stem	160.968
	SRR3591710	White floral bud	181.144
	SRR3591711	White flower	329.447
	SRR3591712	Green floral bud	119.988
	SRR3591713	Yellow flower	136.266
SRP173429	SRR8316895	Juvenile bud stage	23.210
	SRR8316896	Juvenile bud stage	46.236
	SRR8316897	Juvenile bud stage	32.689
	SRR8316894	Third green stage	22.386
	SRR8316900	Third green stage	85.901
	SRR8316901	Third green stage	84.483
	SRR8316898	Complete white stage	52.785
	SRR8316899	Complete white stage	141.190
	SRR8316903	Complete white stage	94.374
	SRR8316902	Silver flowering stage	35.068
	SRR8316904	Silver flowering stage	45.336
	SRR8316905	Silver flowering stage	24.656
	SRR8316906	Gold flowering stage	62.914
	SRR8316907	Gold flowering stage	69.349
	SRR8316908	Gold flowering stage	102.056
SRP132670	SRR6706286	Control	52.165
	SRR6706287	Light intensity 50%	40.998
	SRR6706288	Light intensity 20%	42.234
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	135.866
	CNS0095593	Slightly white alabastrum(diploid) 2	31.959
	CNS0095594	Slightly white alabastrum(diploid) 3	36.642
	CNS0095595	Whole white alabastrum(diploid) 2	38.296
	CNS0095596	Whole white alabastrum(diploid) 3	38.175
	CNS0095597	Whole white alabastrum(diploid) 4	41.325
	CNS0095598	Silvery flower (diploied) 1	313.165
	CNS0095599	Silvery flower (diploied) 2	301.578
	CNS0095600	Silvery flower (diploied) 3	398.364
	CNS0095601	Golden flower (diploid) 1	167.223
	CNS0095602	Golden flower (diploid) 2	224.508
	CNS0095603	Golden flower (diploid) 3	221.960
	CNS0095604	Slightly white alabastrum(tetraploid) 1	40.364
	CNS0095605	Slightly white alabastrum(tetraploid) 2	41.868
	CNS0095606	Slightly white alabastrum(tetraploid) 3	55.443
	CNS0095607	Whole white alabastrum(tetraploid) 1	32.626
	CNS0095608	Whole white alabastrum(tetraploid) 2	38.781
	CNS0095609	Whole white alabastrum(tetraploid) 3	81.435
	CNS0095610	Silvery flower (tetraploid) 1	282.478
	CNS0095611	Silvery flower (tetraploid) 2	293.317
	CNS0095612	Silvery flower (tetraploid) 3	285.835
	CNS0095613	Golden flower (tetraploid) 1	115.411
	CNS0095614	Golden flower (tetraploid) 2	240.682
	CNS0095615	Golden flower (tetraploid) 3	142.187
CRA001975	CRR073297	Stem 1	25.334
	CRR073298	Stem 2	29.277
	CRR073299	Stem 3	25.294
	CRR073300	Leaf 1	51.797
	CRR073301	Leaf 2	48.127
	CRR073302	Leaf 3	42.245
	CRR073303	Juvenile bud 1	69.816
	CRR073304	Juvenile bud 2	73.386
	CRR073305	Juvenile bud 3	87.557
	CRR073306	Third green 1	17.538
	CRR073307	Third green 2	12.812
	CRR073308	Third green 3	15.287
	CRR073309	Second white 1	53.417
	CRR073310	Second white 2	25.667
	CRR073311	Second white 3	22.209
	CRR073312	Silver flowering 1	22.796
	CRR073313	Silver flowering 2	36.766
	CRR073314	Silver flowering 3	34.626
	CRR073315	Gold flowering 1	49.265
	CRR073316	Gold flowering 2	55.010
	CRR073317	Gold flowering 3	61.199
	CRR073318	Tawny withering 1	50.782
	CRR073319	Tawny withering 2	55.641
	CRR073320	Tawny withering 3	34.051