Detail information of GWHGAAZE031409


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP08792.11.1864E-110unnamed protein product [Coffea canephora]
COGYP_008797956.19E-16ubiquitin-conjugating enzyme E2-like protein
Swissprottr|P42749|UBC5_ARATH3E-98Ubiquitin-conjugating enzyme E2 5
trEMBLtr|A0A068UKH1|A0A068UKH1_COFCA4E-111Coffea canephora DH200=94 genomic scaffold, scaffold_35 {ECO:0000313|EMBL:CDP08792.1}
TAIR10AT5G41340.12E-73ubiquitin conjugating enzyme 4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5849808358500774-
GWHAAZE00000009mRNA5849808358500774-
GWHAAZE00000009exon5849808358498213-
GWHAAZE00000009exon5849941558499543-
GWHAAZE00000009exon5849966658499718-
GWHAAZE00000009exon5849981158499925-
GWHAAZE00000009exon5850059558500674-
GWHAAZE00000009exon5850075858500774-
GWHAAZE00000009CDS5850075858500774-
GWHAAZE00000009CDS5850059558500674-
GWHAAZE00000009CDS5849981158499925-
GWHAAZE00000009CDS5849966658499718-
GWHAAZE00000009CDS5849941558499543-
GWHAAZE00000009CDS5849808358498213-
Transcript Sequence

Network for GWHGAAZE031409

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00179.27UQ_con51338.10E-39
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUBC

KEGG pathway

KO Enzyme pathway mapID
K10576UBE2H, UBC8 Ubiquitin mediated proteolysis map04120

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf45.925
SRR3591706second leaf37.382
SRR3591707mature leaf34.159
SRR3591708Shoot apex33.128
SRR3591709Stem91.563
SRR3591710White floral bud37.866
SRR3591711White flower146.172
SRR3591712Green floral bud25.303
SRR3591713Yellow flower310.863
SRP173429 SRR8316895Juvenile bud stage 17.330
SRR8316896Juvenile bud stage 26.517
SRR8316897Juvenile bud stage 11.063
SRR8316894Third green stage 11.636
SRR8316900Third green stage 22.609
SRR8316901Third green stage 21.848
SRR8316898Complete white stage 6.859
SRR8316899Complete white stage 40.922
SRR8316903Complete white stage 16.995
SRR8316902Silver flowering stage26.471
SRR8316904Silver flowering stage31.827
SRR8316905Silver flowering stage13.968
SRR8316906Gold flowering stage 113.929
SRR8316907Gold flowering stage 112.501
SRR8316908Gold flowering stage 201.993
SRP132670SRR6706286Control29.957
SRR6706287Light intensity 50%25.235
SRR6706288Light intensity 20%23.055
CNP0000432CNS0095592Slightly white alabastrum(diploid) 124.617
CNS0095593Slightly white alabastrum(diploid) 220.244
CNS0095594Slightly white alabastrum(diploid) 331.018
CNS0095595Whole white alabastrum(diploid) 218.185
CNS0095596Whole white alabastrum(diploid) 313.066
CNS0095597Whole white alabastrum(diploid) 421.983
CNS0095598Silvery flower (diploied) 158.992
CNS0095599Silvery flower (diploied) 260.116
CNS0095600Silvery flower (diploied) 399.179
CNS0095601Golden flower (diploid) 1110.255
CNS0095602Golden flower (diploid) 2188.204
CNS0095603Golden flower (diploid) 3189.597
CNS0095604Slightly white alabastrum(tetraploid) 125.993
CNS0095605Slightly white alabastrum(tetraploid) 225.411
CNS0095606Slightly white alabastrum(tetraploid) 332.389
CNS0095607Whole white alabastrum(tetraploid) 115.799
CNS0095608Whole white alabastrum(tetraploid) 217.410
CNS0095609Whole white alabastrum(tetraploid) 321.379
CNS0095610Silvery flower (tetraploid) 1237.703
CNS0095611Silvery flower (tetraploid) 2227.901
CNS0095612Silvery flower (tetraploid) 3225.166
CNS0095613Golden flower (tetraploid) 1376.473
CNS0095614Golden flower (tetraploid) 2275.253
CNS0095615Golden flower (tetraploid) 3425.597
CRA001975CRR073297Stem 124.750
CRR073298Stem 225.627
CRR073299Stem 325.844
CRR073300Leaf 122.503
CRR073301Leaf 217.881
CRR073302Leaf 319.271
CRR073303Juvenile bud 121.327
CRR073304Juvenile bud 218.257
CRR073305Juvenile bud 316.268
CRR073306Third green 17.401
CRR073307Third green 25.646
CRR073308Third green 35.004
CRR073309Second white 127.540
CRR073310Second white 235.229
CRR073311Second white 337.651
CRR073312Silver flowering 159.913
CRR073313Silver flowering 267.221
CRR073314Silver flowering 383.870
CRR073315Gold flowering 169.918
CRR073316Gold flowering 287.601
CRR073317Gold flowering 362.145
CRR073318Tawny withering 137.981
CRR073319Tawny withering 229.748
CRR073320Tawny withering 343.405