Detail information of GWHGAAZE031412


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDO86238.17.69304E-75hypothetical protein CISIN_1g028554mg [Citrus sinensis]
Swissprottr|Q8LE94|RING3_ARATH2E-21E3 ubiquitin-protein ligase At3g02290
trEMBLtr|A0A067H2P0|A0A067H2P0_CITSI3E-75Uncharacterized protein {ECO:0000313|EMBL:KDO86238.1}
TAIR10AT4G00335.37E-46RING-H2 finger B1A

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5854210458543361-
GWHAAZE00000009mRNA5854210458543361-
GWHAAZE00000009exon5854210458542252-
GWHAAZE00000009exon5854263758543006-
GWHAAZE00000009exon5854329958543361-
GWHAAZE00000009CDS5854329958543361-
GWHAAZE00000009CDS5854263758543006-
GWHAAZE00000009CDS5854210458542252-
Transcript Sequence

Network for GWHGAAZE031412

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12678.8zf-rbx11321807.50E-12
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270molecular_functionzinc ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf8.437
SRR3591706second leaf6.119
SRR3591707mature leaf5.600
SRR3591708Shoot apex7.301
SRR3591709Stem12.252
SRR3591710White floral bud7.021
SRR3591711White flower8.264
SRR3591712Green floral bud6.699
SRR3591713Yellow flower6.519
SRP173429 SRR8316895Juvenile bud stage 4.358
SRR8316896Juvenile bud stage 7.697
SRR8316897Juvenile bud stage 2.135
SRR8316894Third green stage 2.366
SRR8316900Third green stage 5.626
SRR8316901Third green stage 6.380
SRR8316898Complete white stage 5.104
SRR8316899Complete white stage 9.969
SRR8316903Complete white stage 7.327
SRR8316902Silver flowering stage2.841
SRR8316904Silver flowering stage6.888
SRR8316905Silver flowering stage3.843
SRR8316906Gold flowering stage 9.470
SRR8316907Gold flowering stage 9.186
SRR8316908Gold flowering stage 9.412
SRP132670SRR6706286Control8.053
SRR6706287Light intensity 50%5.387
SRR6706288Light intensity 20%6.574
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.686
CNS0095593Slightly white alabastrum(diploid) 23.257
CNS0095594Slightly white alabastrum(diploid) 35.601
CNS0095595Whole white alabastrum(diploid) 23.565
CNS0095596Whole white alabastrum(diploid) 34.317
CNS0095597Whole white alabastrum(diploid) 43.820
CNS0095598Silvery flower (diploied) 13.713
CNS0095599Silvery flower (diploied) 22.867
CNS0095600Silvery flower (diploied) 37.767
CNS0095601Golden flower (diploid) 13.587
CNS0095602Golden flower (diploid) 27.850
CNS0095603Golden flower (diploid) 38.766
CNS0095604Slightly white alabastrum(tetraploid) 14.783
CNS0095605Slightly white alabastrum(tetraploid) 24.479
CNS0095606Slightly white alabastrum(tetraploid) 37.596
CNS0095607Whole white alabastrum(tetraploid) 14.600
CNS0095608Whole white alabastrum(tetraploid) 21.797
CNS0095609Whole white alabastrum(tetraploid) 34.708
CNS0095610Silvery flower (tetraploid) 17.045
CNS0095611Silvery flower (tetraploid) 28.202
CNS0095612Silvery flower (tetraploid) 38.595
CNS0095613Golden flower (tetraploid) 14.887
CNS0095614Golden flower (tetraploid) 27.738
CNS0095615Golden flower (tetraploid) 38.216
CRA001975CRR073297Stem 112.053
CRR073298Stem 210.947
CRR073299Stem 310.952
CRR073300Leaf 110.963
CRR073301Leaf 211.299
CRR073302Leaf 38.533
CRR073303Juvenile bud 18.720
CRR073304Juvenile bud 26.405
CRR073305Juvenile bud 311.161
CRR073306Third green 12.629
CRR073307Third green 22.758
CRR073308Third green 32.790
CRR073309Second white 110.860
CRR073310Second white 27.772
CRR073311Second white 35.896
CRR073312Silver flowering 15.523
CRR073313Silver flowering 29.717
CRR073314Silver flowering 34.167
CRR073315Gold flowering 112.862
CRR073316Gold flowering 211.275
CRR073317Gold flowering 312.690
CRR073318Tawny withering 112.156
CRR073319Tawny withering 211.335
CRR073320Tawny withering 39.379