Gene detail

Detail information of GWHGAAZE031435

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006444947.1	0	hypothetical protein CICLE_v10020577mg [Citrus clementina]
COG	YP_003701501.1	1E-90	3-methyl-2-oxobutanoatehydroxymethyltransferase
Swissprot	tr\|O82357\|PANB1_ARATH	0	3-methyl-2-oxobutanoate hydroxymethyltransferase 1, mitochondrial (Precursor)
trEMBL	tr\|A0A067HEP1\|A0A067HEP1_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO86316.1}
TAIR10	AT2G46110.1	4E-161	ketopantoate hydroxymethyltransferase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	58898253	58901622	-
GWHAAZE00000009	mRNA	58898253	58901622	-
GWHAAZE00000009	exon	58898253	58898495	-
GWHAAZE00000009	exon	58898586	58898639	-
GWHAAZE00000009	exon	58899036	58899182	-
GWHAAZE00000009	exon	58899295	58899501	-
GWHAAZE00000009	exon	58901197	58901622	-
GWHAAZE00000009	CDS	58901197	58901622	-
GWHAAZE00000009	CDS	58899295	58899501	-
GWHAAZE00000009	CDS	58899036	58899182	-
GWHAAZE00000009	CDS	58898586	58898639	-
GWHAAZE00000009	CDS	58898253	58898495	-

Transcript Sequence
>GWHTAAZE031471 ATGGCAGCAGCACTTTTCTCAACCTTGTCAAAATTCTCCAAATCCACCGCAACCACCTCCCTCCTCTTCTCCAAACTCCGATGCATGAGCAACGTCCCCGAAAACACCGTCTACGGCGGACCTAAGCCTCAAAACGTTAACCAAAGAGTAACCCTAACTCATCTCCACCAGAAACACCGCAGGGCCGAGCCTATTACTATGGTCACCGCTTACGATTACCCCTCCGCCGTCCACCTCGATACGGCCGGAATCGATATTTGCCTCGTCGGAGACTCCGCCTCCATGGTGGTTCACGGCCACGACACTACTCTTCCGATTACTCTGGATGAAATGCTGGTGCATTGTAGATCCGTTGCTCGAGGGGCTAAACGGCCGTTACTTGTAGGAGATTTACCCTTTGGGACATACGAGTCTAGCACTGATCAGGCAGTTGATACAGCGGTTAGGGTGTTGAAGGAGGGAGGAATGGATGCGATTAAACTGGAAGGCGGGTCCCCATCAAGAATCACAGCTGCAAAAGCGATTGTTGAATCTGGAATCGCTGTTATGGGGCACGTGGGACTTACTCCTCAGGCAATTAGTGTTCTTGGGGGGTTTAGGCCTCAAGGAAAGAACATTGCGAGTGCCGTCAAGGTTGTGGAGACCGCACTGGCATTACAAAAAGCTGGGTGCTTCTCTGTTGTTCTTGAATGCATTCCTGCACCTGTGGCTGCTGCTGCTACATCTGCTCTTCAGATACCAACCATTGGTATAGGGGCTGGACCTTTCTGCAGTGGGCAGGTCCTGGTTTACCATGACCTACTCGGAATGATGCAACACCCACATCATGCCAAGGTCACGCCAAAGTTTTGTAAACAATTTGGGCAAGTGGGAGATGTGATAAATAAAGCTCTTTTGGAGTACAAGGAGGAGGTTACAAATGGTTCGTTTCCGGGTGCTGCCCACAGCCCATATAAAATCGGTGGTGCTGATGTTGATGGTTTCTTGAACGAGTTACAAAAGTTGGGTTTGGATAAAGCAGCTGAAGCAGCAGCCGATGCAGCTGAAGCAGCAGCCAAGAAGATGACGGTCTGCTAA

Network for GWHGAAZE031435

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02548.16	Pantoate_transf	49	312	2.10E-107

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00606	panB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Pantothenate and CoA biosynthesis	map00770

Gene Ontology

GO term	Ontology	Name
GO:0015940	biological_process	pantothenate biosynthetic process
GO:0003864	molecular_function	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.046
	SRR3591706	second leaf	19.167
	SRR3591707	mature leaf	11.747
	SRR3591708	Shoot apex	15.352
	SRR3591709	Stem	5.684
	SRR3591710	White floral bud	3.056
	SRR3591711	White flower	6.995
	SRR3591712	Green floral bud	8.671
	SRR3591713	Yellow flower	7.660
SRP173429	SRR8316895	Juvenile bud stage	11.783
	SRR8316896	Juvenile bud stage	18.166
	SRR8316897	Juvenile bud stage	7.427
	SRR8316894	Third green stage	5.813
	SRR8316900	Third green stage	17.809
	SRR8316901	Third green stage	16.178
	SRR8316898	Complete white stage	0.647
	SRR8316899	Complete white stage	5.484
	SRR8316903	Complete white stage	1.976
	SRR8316902	Silver flowering stage	0.930
	SRR8316904	Silver flowering stage	1.101
	SRR8316905	Silver flowering stage	0.462
	SRR8316906	Gold flowering stage	3.361
	SRR8316907	Gold flowering stage	4.512
	SRR8316908	Gold flowering stage	4.274
SRP132670	SRR6706286	Control	11.739
	SRR6706287	Light intensity 50%	10.782
	SRR6706288	Light intensity 20%	13.631
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.815
	CNS0095593	Slightly white alabastrum(diploid) 2	9.299
	CNS0095594	Slightly white alabastrum(diploid) 3	12.113
	CNS0095595	Whole white alabastrum(diploid) 2	8.707
	CNS0095596	Whole white alabastrum(diploid) 3	11.760
	CNS0095597	Whole white alabastrum(diploid) 4	4.938
	CNS0095598	Silvery flower (diploied) 1	6.957
	CNS0095599	Silvery flower (diploied) 2	5.295
	CNS0095600	Silvery flower (diploied) 3	3.903
	CNS0095601	Golden flower (diploid) 1	5.689
	CNS0095602	Golden flower (diploid) 2	7.408
	CNS0095603	Golden flower (diploid) 3	6.866
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.992
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.331
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.655
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.591
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.538
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.804
	CNS0095610	Silvery flower (tetraploid) 1	10.425
	CNS0095611	Silvery flower (tetraploid) 2	9.497
	CNS0095612	Silvery flower (tetraploid) 3	5.505
	CNS0095613	Golden flower (tetraploid) 1	4.949
	CNS0095614	Golden flower (tetraploid) 2	14.173
	CNS0095615	Golden flower (tetraploid) 3	4.050
CRA001975	CRR073297	Stem 1	14.901
	CRR073298	Stem 2	17.445
	CRR073299	Stem 3	18.530
	CRR073300	Leaf 1	10.385
	CRR073301	Leaf 2	10.835
	CRR073302	Leaf 3	12.572
	CRR073303	Juvenile bud 1	8.741
	CRR073304	Juvenile bud 2	8.013
	CRR073305	Juvenile bud 3	7.285
	CRR073306	Third green 1	1.606
	CRR073307	Third green 2	1.824
	CRR073308	Third green 3	1.085
	CRR073309	Second white 1	6.153
	CRR073310	Second white 2	3.717
	CRR073311	Second white 3	2.701
	CRR073312	Silver flowering 1	5.880
	CRR073313	Silver flowering 2	6.109
	CRR073314	Silver flowering 3	5.203
	CRR073315	Gold flowering 1	8.579
	CRR073316	Gold flowering 2	7.340
	CRR073317	Gold flowering 3	9.310
	CRR073318	Tawny withering 1	5.046
	CRR073319	Tawny withering 2	6.039
	CRR073320	Tawny withering 3	3.999