Gene detail

Detail information of GWHGAAZE031445

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ABF82271.1	3.49834E-87	class III chitinase [Panax ginseng]
Swissprot	tr\|O22072\|CHIA_ARATH	3E-66	Acidic endochitinase (Precursor)
trEMBL	tr\|Q19AL0\|Q19AL0_PANGI	1E-87	Class III chitinase {ECO:0000313\|EMBL:ABF82271.1}
TAIR10	AT5G24090.1	1E-55	chitinase A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	58990983	58993957	+
GWHAAZE00000009	mRNA	58990983	58993957	+
GWHAAZE00000009	exon	58990983	58991390	+
GWHAAZE00000009	exon	58993239	58993286	+
GWHAAZE00000009	exon	58993357	58993483	+
GWHAAZE00000009	exon	58993551	58993957	+
GWHAAZE00000009	CDS	58990983	58991390	+
GWHAAZE00000009	CDS	58993239	58993286	+
GWHAAZE00000009	CDS	58993357	58993483	+
GWHAAZE00000009	CDS	58993551	58993957	+

Transcript Sequence
>GWHTAAZE031481 ATGGAATGTAAACTTAAAAATGAGAAAGGGGAAAGTAAACATGAAGGAAATGAGAGACAACAAACTCAAGCTTATGTCCCTCGGTATAAAGGTGAAACATCTCGATTAATTGGTCCAAACGCTGCTCCGGTGGAGAGCACTTCAGGTGTTCGAGGTAATGTTTTGGTCATTTCTAGTGAGGCTCTTGTTGATTTTTCTTTGCCCATTTTTCCTGGAGGGCAGCCTTGTTTAGCACATGTTCAAATTCCTAATCGAACTCAACCTATAATTCAAGGAAATGTGGGTATTTTAGCTGATAAGTATGGGCAAGTAGCTCTAATTCTAAGAAATGGGAGGAAGATGAAAGTATTATTGTTTGGGCAATTGAGATACAATCGACTCCTCCTAGCGTTATTGGTAGTCAGTCAAGTGGAATGCTATCTACTGGGGACAGAATGGCAACAAGGATACCTTAAAGCTCCGATGATTAACCTTGCTGGTCACTGCGATCCCTCCGTTAACGGCTGCACTGGCTTACGCTCTGATGTAAAATTTTGCCAATCAAAAGGAATCAAGGTGATTCTTTCCATCGGAGGAGCATCCAGGGAAAACTCATCTTCTCGCCCTCTTGGGGATGCAATTTTGGATGGAATTGACTTTGATATCGAAGCAGGAACAGGTCAATACTGGGATGACCTGGCTAGGTACCTTTCTAGTTATAGCAACCAAGGTAAGAAAGGGTACTTAACCGTGGCTCCCCAGTGTCCTTTCCCTGATGCGTGGGTCGGGGGTGCCCTTAATAAGGGTCTTTTCGACAATGTTTGGGTTCAATTCTTTAACAACCCTCCTTGCCAGTATAGTTCAGGGAATATTAGTGACCTTGAAGATGCATGGAAGCAATGGACTTCGGATATACCGGCCACCAAGATCTTCCTAGGGCTACCTGATGCAGCTGGAAGAGGCTTTGTGTTTGTGGGTGATCTTACTTCCGAAGTGGCTTCCGGCAATTAA

Network for GWHGAAZE031445

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00704.29	Glyco_hydro_18	176	309	9.90E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01183	E3.2.1.14	Metabolic pathways	map01100
K01183	E3.2.1.14	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.012
	SRR3591706	second leaf	0.043
	SRR3591707	mature leaf	0.078
	SRR3591708	Shoot apex	0.181
	SRR3591709	Stem	0.522
	SRR3591710	White floral bud	0.001
	SRR3591711	White flower	0.138
	SRR3591712	Green floral bud	0.344
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.178
	SRR8316896	Juvenile bud stage	0.228
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.125
	SRR8316900	Third green stage	0.306
	SRR8316901	Third green stage	0.109
	SRR8316898	Complete white stage	0.001
	SRR8316899	Complete white stage	0.325
	SRR8316903	Complete white stage	0.081
	SRR8316902	Silver flowering stage	0.024
	SRR8316904	Silver flowering stage	0.022
	SRR8316905	Silver flowering stage	0.050
	SRR8316906	Gold flowering stage	0.049
	SRR8316907	Gold flowering stage	0.128
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.156
	SRR6706287	Light intensity 50%	0.149
	SRR6706288	Light intensity 20%	0.147
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.315
	CNS0095593	Slightly white alabastrum(diploid) 2	0.178
	CNS0095594	Slightly white alabastrum(diploid) 3	0.230
	CNS0095595	Whole white alabastrum(diploid) 2	0.800
	CNS0095596	Whole white alabastrum(diploid) 3	0.587
	CNS0095597	Whole white alabastrum(diploid) 4	0.411
	CNS0095598	Silvery flower (diploied) 1	0.265
	CNS0095599	Silvery flower (diploied) 2	0.226
	CNS0095600	Silvery flower (diploied) 3	0.099
	CNS0095601	Golden flower (diploid) 1	0.103
	CNS0095602	Golden flower (diploid) 2	0.276
	CNS0095603	Golden flower (diploid) 3	0.128
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.218
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.308
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.115
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.421
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.143
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.150
	CNS0095610	Silvery flower (tetraploid) 1	0.178
	CNS0095611	Silvery flower (tetraploid) 2	0.085
	CNS0095612	Silvery flower (tetraploid) 3	0.043
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.021
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.317
	CRR073298	Stem 2	0.389
	CRR073299	Stem 3	0.134
	CRR073300	Leaf 1	0.269
	CRR073301	Leaf 2	0.244
	CRR073302	Leaf 3	0.125
	CRR073303	Juvenile bud 1	0.061
	CRR073304	Juvenile bud 2	0.085
	CRR073305	Juvenile bud 3	0.125
	CRR073306	Third green 1	0.063
	CRR073307	Third green 2	0.001
	CRR073308	Third green 3	0.075
	CRR073309	Second white 1	0.033
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.124
	CRR073316	Gold flowering 2	0.009
	CRR073317	Gold flowering 3	0.018
	CRR073318	Tawny withering 1	0.097
	CRR073319	Tawny withering 2	0.167
	CRR073320	Tawny withering 3	0.238