Gene detail

Detail information of GWHGAAZE031451

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002320852.2	1.70447E-96	hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
Swissprot	tr\|Q9SKD9\|WRK46_ARATH	4E-46	Probable WRKY transcription factor 46
trEMBL	tr\|B9I8V9\|B9I8V9_POPTR	6E-97	Uncharacterized protein {ECO:0000313\|EMBL:EEE99167.2}
TAIR10	AT2G46400.1	3E-36	WRKY DNA-binding protein 46

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	59050681	59052148	+
GWHAAZE00000009	mRNA	59050681	59052148	+
GWHAAZE00000009	exon	59050681	59050961	+
GWHAAZE00000009	exon	59051084	59051200	+
GWHAAZE00000009	exon	59051629	59052148	+
GWHAAZE00000009	CDS	59050681	59050961	+
GWHAAZE00000009	CDS	59051084	59051200	+
GWHAAZE00000009	CDS	59051629	59052148	+

Transcript Sequence
>GWHTAAZE031487 ATGGATTTGGAACAGACTACTCTTATAAATGAGCTAAAGCAGGGGAAAGAGTTGGCCAACCAGCTCAAGAACCACCTTGATACAACTTCACCACAAACTTGTGAATTTCTACTTGAGAAAATACTTTCCTCTTATGAGAAATCACTTTCATTGCTAAATTGGAGTGCTTTAATGAAACAGCAACTGCCTGTGGATTCACTTGCTGATGCAATTAGTCCAAAGAGTGAAACATTTGAGCATGATTCTAAGTATAAATGCCACAAAAATGTCTTCAAGAAGAGAAAGGTGACAATGCCACGATGGGGTAAAGAAGTACACGTTTGCGAAGGGGCTCTTGATGATGGTTATAGTTGGAGAAAATATGGCCAGAAAGACATCCTTAGAACTAATTTTCCGAGAGCATATTACAGATGCAGTCATAGACACACACAAGGCTGTTTGGCAACAAAACAAGTCCAGAAATCAGATGAGGACCCATCAATATTTGAAATTACATACAGAGGAAAACACACCTGTATCCAAACTTCCCCTTTCTCCTCAGTAGAAAAAGAATCGCCAAAAGAAAACAAACACCACCCTCATTTTGAGCCACAACAAGAAGAAATTCAACACCAACCAGAGGAAATTTTGTTCAATTCCCATATCAGCCTTGAAAGTGAGGATATATTTCCTTCCTTCTCTTTTCCTTCCACTCCATTGGGATACGAAAACGCAGAAAGCAATTCTTTTCCACAGTGGCAGGTGAATTGTTTTGGAATATTAGACTACAATTTACATAGTTCTGATTCCAGTCATACGGAAATAATTTCAGCTCCAACATCGGTTGCAAATTCTCCCATTGGGGACTTCGAATTTTCAGTTGATCAAGTGGATTTCAAAACCAACTTTCCCTTTGATATCCAGGAATTCTTTTCTTAG

Network for GWHGAAZE031451

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03106.16	WRKY	113	172	2.90E-26

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	48.466
	SRR3591706	second leaf	18.809
	SRR3591707	mature leaf	4.867
	SRR3591708	Shoot apex	47.195
	SRR3591709	Stem	98.438
	SRR3591710	White floral bud	12.926
	SRR3591711	White flower	41.634
	SRR3591712	Green floral bud	11.762
	SRR3591713	Yellow flower	13.529
SRP173429	SRR8316895	Juvenile bud stage	62.030
	SRR8316896	Juvenile bud stage	40.004
	SRR8316897	Juvenile bud stage	53.632
	SRR8316894	Third green stage	10.790
	SRR8316900	Third green stage	11.590
	SRR8316901	Third green stage	14.494
	SRR8316898	Complete white stage	2.079
	SRR8316899	Complete white stage	34.593
	SRR8316903	Complete white stage	3.641
	SRR8316902	Silver flowering stage	4.795
	SRR8316904	Silver flowering stage	4.697
	SRR8316905	Silver flowering stage	3.586
	SRR8316906	Gold flowering stage	29.011
	SRR8316907	Gold flowering stage	17.483
	SRR8316908	Gold flowering stage	16.757
SRP132670	SRR6706286	Control	0.925
	SRR6706287	Light intensity 50%	1.040
	SRR6706288	Light intensity 20%	0.398
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	27.870
	CNS0095593	Slightly white alabastrum(diploid) 2	63.553
	CNS0095594	Slightly white alabastrum(diploid) 3	31.517
	CNS0095595	Whole white alabastrum(diploid) 2	24.643
	CNS0095596	Whole white alabastrum(diploid) 3	5.118
	CNS0095597	Whole white alabastrum(diploid) 4	10.341
	CNS0095598	Silvery flower (diploied) 1	42.916
	CNS0095599	Silvery flower (diploied) 2	69.872
	CNS0095600	Silvery flower (diploied) 3	45.565
	CNS0095601	Golden flower (diploid) 1	135.435
	CNS0095602	Golden flower (diploid) 2	98.238
	CNS0095603	Golden flower (diploid) 3	96.318
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.569
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.342
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.064
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.437
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.056
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.373
	CNS0095610	Silvery flower (tetraploid) 1	4.173
	CNS0095611	Silvery flower (tetraploid) 2	3.027
	CNS0095612	Silvery flower (tetraploid) 3	5.004
	CNS0095613	Golden flower (tetraploid) 1	1.314
	CNS0095614	Golden flower (tetraploid) 2	2.121
	CNS0095615	Golden flower (tetraploid) 3	0.453
CRA001975	CRR073297	Stem 1	4.803
	CRR073298	Stem 2	5.369
	CRR073299	Stem 3	4.777
	CRR073300	Leaf 1	3.611
	CRR073301	Leaf 2	6.292
	CRR073302	Leaf 3	0.671
	CRR073303	Juvenile bud 1	1.719
	CRR073304	Juvenile bud 2	1.327
	CRR073305	Juvenile bud 3	4.972
	CRR073306	Third green 1	0.347
	CRR073307	Third green 2	0.631
	CRR073308	Third green 3	0.776
	CRR073309	Second white 1	0.789
	CRR073310	Second white 2	0.521
	CRR073311	Second white 3	0.366
	CRR073312	Silver flowering 1	2.290
	CRR073313	Silver flowering 2	1.801
	CRR073314	Silver flowering 3	0.849
	CRR073315	Gold flowering 1	6.879
	CRR073316	Gold flowering 2	10.390
	CRR073317	Gold flowering 3	8.796
	CRR073318	Tawny withering 1	9.765
	CRR073319	Tawny withering 2	25.352
	CRR073320	Tawny withering 3	16.487