Gene detail

Detail information of GWHGAAZE031481

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ABF82271.1	9.63403E-89	class III chitinase [Panax ginseng]
Swissprot	tr\|O22072\|CHIA_ARATH	4E-68	Acidic endochitinase (Precursor)
trEMBL	tr\|Q19AL0\|Q19AL0_PANGI	4E-89	Class III chitinase {ECO:0000313\|EMBL:ABF82271.1}
TAIR10	AT5G24090.1	2E-56	chitinase A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	59486373	59489342	-
GWHAAZE00000009	mRNA	59486373	59489342	-
GWHAAZE00000009	exon	59488935	59489342	-
GWHAAZE00000009	exon	59486847	59486973	-
GWHAAZE00000009	exon	59486373	59486779	-
GWHAAZE00000009	CDS	59488935	59489342	-
GWHAAZE00000009	CDS	59486847	59486973	-
GWHAAZE00000009	CDS	59486373	59486779	-

Transcript Sequence
>GWHTAAZE031517 ATGGAATGTAAACTTAAAAATGAGAAAGGGGAAAGTAAACATGAAGGAAATGAGAGACAACAAACTCAAGCTTATGTCCCTCGGTATAAAGGTGAAACATCTCGATTAATTGGTCCAAACGCTGCTCCGGTGGAGAGCACTTCAGGTGTTCGAGGTAATGTTTTGGTCATTTCTAGTGAGGCTCTTGTTGATTTTTCTTTGCCCATTTTTCCTGGAGGGCAGCCTTGTTTAGCACATGTTCAAATTCCTAATCGAACTCAACCTATAATTCAAGGAAATGTGGGTATTTTAGCTGATAAGTATGGGCAAGTAGCTCTAATTCTAAGAAATGGGAGGAAGATGAAAGTATTATTGTTTGGGCAATTGAGATACAATCGACTCCTCCTAGCGTTATTGGTAGTCAGTCAAGCTCCGATGATTAACCTTGCTGGTCACTGCGATCCCTCCGTTAACGGCTGCACTGGCTTACGCTCTGATGTAAAATTTTGCCAATCAAAAGGAATCAAGGTGATTCTTTCCATCGGAGGAGCATCCAGGGAAAACTCATCTTCTCGCCCTCTTGGGGATGCAATTTTGGATGGAATTGACTTTGATATCGAAGCAGGAACAGGTCAATACTGGGATGACCTGGCTAGGTACCTTTCTAGTTATAGCAACCAAGGTAAGAAAGGGTACTTAACCGTGGCTCCCCAGTGTCCTTTCCCTGATGCGTGGGTCGGGGGTGCCCTTAATAAGGGTCTTTTCGACAATGTTTGGGTTCAATTCTTTAACAACCCTCCTTGCCAGTATAGTTCAGGGAATATTAGTGACCTTGAAGATGCATGGAAGCAATGGACTTCGGATATACCGGCCACCAAGATCTTCCTAGGGCTACCTGATGCAGCTGGAAGAGGCTTTGTGTTTGTGGGTGATCTTACTTCCGAAGTGGCTTCCGGCAATTAA

Network for GWHGAAZE031481

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00704.29	Glyco_hydro_18	160	293	1.10E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01183	E3.2.1.14	Metabolic pathways	map01100
K01183	E3.2.1.14	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.045
	SRR3591707	mature leaf	0.082
	SRR3591708	Shoot apex	0.250
	SRR3591709	Stem	0.413
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.145
	SRR3591712	Green floral bud	0.331
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.181
	SRR8316896	Juvenile bud stage	0.193
	SRR8316897	Juvenile bud stage	0.016
	SRR8316894	Third green stage	0.123
	SRR8316900	Third green stage	0.305
	SRR8316901	Third green stage	0.110
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.342
	SRR8316903	Complete white stage	0.074
	SRR8316902	Silver flowering stage	0.026
	SRR8316904	Silver flowering stage	0.023
	SRR8316905	Silver flowering stage	0.103
	SRR8316906	Gold flowering stage	0.050
	SRR8316907	Gold flowering stage	0.122
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.207
	SRR6706287	Light intensity 50%	0.151
	SRR6706288	Light intensity 20%	0.170
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.364
	CNS0095593	Slightly white alabastrum(diploid) 2	0.236
	CNS0095594	Slightly white alabastrum(diploid) 3	0.271
	CNS0095595	Whole white alabastrum(diploid) 2	0.868
	CNS0095596	Whole white alabastrum(diploid) 3	0.540
	CNS0095597	Whole white alabastrum(diploid) 4	0.432
	CNS0095598	Silvery flower (diploied) 1	0.389
	CNS0095599	Silvery flower (diploied) 2	0.211
	CNS0095600	Silvery flower (diploied) 3	0.152
	CNS0095601	Golden flower (diploid) 1	0.098
	CNS0095602	Golden flower (diploid) 2	0.290
	CNS0095603	Golden flower (diploid) 3	0.179
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.228
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.258
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.079
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.326
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.124
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.136
	CNS0095610	Silvery flower (tetraploid) 1	0.177
	CNS0095611	Silvery flower (tetraploid) 2	0.082
	CNS0095612	Silvery flower (tetraploid) 3	0.045
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.019
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.520
	CRR073298	Stem 2	0.316
	CRR073299	Stem 3	0.139
	CRR073300	Leaf 1	0.280
	CRR073301	Leaf 2	0.264
	CRR073302	Leaf 3	0.131
	CRR073303	Juvenile bud 1	0.078
	CRR073304	Juvenile bud 2	0.086
	CRR073305	Juvenile bud 3	0.182
	CRR073306	Third green 1	0.065
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.034
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.128
	CRR073316	Gold flowering 2	0.021
	CRR073317	Gold flowering 3	0.173
	CRR073318	Tawny withering 1	0.062
	CRR073319	Tawny withering 2	0.176
	CRR073320	Tawny withering 3	0.430