Detail information of GWHGAAZE031488


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006444871.10hypothetical protein CICLE_v10023767mg [Citrus clementina]
Swissprottr|Q689D6|RPD1_ARATH9E-47Protein ROOT PRIMORDIUM DEFECTIVE 1
trEMBLtr|V4U7F0|V4U7F0_9ROSI0Uncharacterized protein {ECO:0000313|EMBL:ESR58111.1}
TAIR10AT4G01037.12E-157Ubiquitin carboxyl-terminal hydrolase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene5958043459581780+
GWHAAZE00000009mRNA5958043459581780+
GWHAAZE00000009exon5958043459581780+
GWHAAZE00000009CDS5958043459581780+
Transcript Sequence

Network for GWHGAAZE031488

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0217


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF11955.9PORR884161.20E-107
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.595
SRR3591706second leaf4.812
SRR3591707mature leaf11.010
SRR3591708Shoot apex11.274
SRR3591709Stem5.993
SRR3591710White floral bud6.776
SRR3591711White flower24.786
SRR3591712Green floral bud9.174
SRR3591713Yellow flower22.994
SRP173429 SRR8316895Juvenile bud stage 5.172
SRR8316896Juvenile bud stage 6.402
SRR8316897Juvenile bud stage 4.837
SRR8316894Third green stage 4.694
SRR8316900Third green stage 15.909
SRR8316901Third green stage 9.956
SRR8316898Complete white stage 3.159
SRR8316899Complete white stage 11.689
SRR8316903Complete white stage 5.743
SRR8316902Silver flowering stage4.739
SRR8316904Silver flowering stage7.661
SRR8316905Silver flowering stage3.681
SRR8316906Gold flowering stage 11.571
SRR8316907Gold flowering stage 9.893
SRR8316908Gold flowering stage 12.914
SRP132670SRR6706286Control7.696
SRR6706287Light intensity 50%7.527
SRR6706288Light intensity 20%8.734
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.286
CNS0095593Slightly white alabastrum(diploid) 25.178
CNS0095594Slightly white alabastrum(diploid) 34.350
CNS0095595Whole white alabastrum(diploid) 25.488
CNS0095596Whole white alabastrum(diploid) 34.892
CNS0095597Whole white alabastrum(diploid) 44.829
CNS0095598Silvery flower (diploied) 110.513
CNS0095599Silvery flower (diploied) 27.782
CNS0095600Silvery flower (diploied) 318.435
CNS0095601Golden flower (diploid) 15.924
CNS0095602Golden flower (diploid) 215.593
CNS0095603Golden flower (diploid) 312.812
CNS0095604Slightly white alabastrum(tetraploid) 17.008
CNS0095605Slightly white alabastrum(tetraploid) 25.493
CNS0095606Slightly white alabastrum(tetraploid) 315.776
CNS0095607Whole white alabastrum(tetraploid) 13.221
CNS0095608Whole white alabastrum(tetraploid) 23.350
CNS0095609Whole white alabastrum(tetraploid) 314.328
CNS0095610Silvery flower (tetraploid) 127.021
CNS0095611Silvery flower (tetraploid) 232.875
CNS0095612Silvery flower (tetraploid) 319.229
CNS0095613Golden flower (tetraploid) 114.183
CNS0095614Golden flower (tetraploid) 221.750
CNS0095615Golden flower (tetraploid) 316.924
CRA001975CRR073297Stem 110.117
CRR073298Stem 28.910
CRR073299Stem 38.925
CRR073300Leaf 18.338
CRR073301Leaf 28.408
CRR073302Leaf 311.262
CRR073303Juvenile bud 111.733
CRR073304Juvenile bud 27.774
CRR073305Juvenile bud 38.559
CRR073306Third green 12.022
CRR073307Third green 21.382
CRR073308Third green 32.430
CRR073309Second white 13.456
CRR073310Second white 23.411
CRR073311Second white 34.010
CRR073312Silver flowering 12.733
CRR073313Silver flowering 23.950
CRR073314Silver flowering 32.039
CRR073315Gold flowering 127.523
CRR073316Gold flowering 232.184
CRR073317Gold flowering 317.462
CRR073318Tawny withering 14.288
CRR073319Tawny withering 23.605
CRR073320Tawny withering 34.659