Gene detail

Detail information of GWHGAAZE031493

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP08692.1	unnamed protein product [Coffea canephora]
trEMBL	tr\|A0A068UKA9\|A0A068UKA9_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_35 {ECO:0000313\|EMBL:CDP08692.1}
TAIR10	AT3G61690.1	nucleotidyltransferases

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	59672358	59683925	+
GWHAAZE00000009	mRNA	59672358	59683925	+
GWHAAZE00000009	exon	59672358	59672585	+
GWHAAZE00000009	exon	59674183	59674371	+
GWHAAZE00000009	exon	59677641	59677733	+
GWHAAZE00000009	exon	59677838	59678020	+
GWHAAZE00000009	exon	59678110	59678212	+
GWHAAZE00000009	exon	59678320	59678505	+
GWHAAZE00000009	exon	59680336	59682587	+
GWHAAZE00000009	exon	59683308	59683925	+
GWHAAZE00000009	CDS	59672358	59672585	+
GWHAAZE00000009	CDS	59674183	59674371	+
GWHAAZE00000009	CDS	59677641	59677733	+
GWHAAZE00000009	CDS	59677838	59678020	+
GWHAAZE00000009	CDS	59678110	59678212	+
GWHAAZE00000009	CDS	59678320	59678505	+
GWHAAZE00000009	CDS	59680336	59682587	+
GWHAAZE00000009	CDS	59683308	59683925	+

Transcript Sequence
>GWHTAAZE031529 ATGGGCGAGCATGAGGAGTGGGCGCAGCCAAGTGGCCTATTGCCTAATGGGCTATTGCCCAATGCAGGTCCCTTGATCCGAGTCTTTGACTCGGAAAGATGGTTAAAGGCTGAGGAGAGAACTGCAGAACTTGTTGCCTGCATTCAGCCCAACCAACCATCGGAAGAGCGAAGAAATGCAGTCGCCGATTATGTGCAGCGACTCATAATGAAGTGCTTTCCCTGTCAGGTCTTTACTTTTGGGTCTGTACCCCTTAAGACTTATTTACCTGATGGAGACATCGACTTAACAGCCTTCAGTAATAATCAAAATTTGAAAGACACGTGGGCTAGTGAGGTCAGAGATATGCTAGAAAATGAGGAGAAGAATGAGAATGCTGAATTTCACGTCAAGGAGGTTCAATACATCCAAGCAGAAGTGAAGATAATAAAGTGCCTTGTGGAAAATATTGTGGTAGACATATCTTTTAACCAGCTTGGTGGTTTATGCACCCTTTGCTTCCTCGAGGAGGTTGATCATTTAATAAATCAGAATCATTTATTCAAGCGTAGCATTATATTAATTAAAGCATGGTGTTACTATGAGAGCCGTATATTGGGCGCTCACCATGGACTTATCTCAACATATGCGCTGGAGACGTTGGTTCTCTACATATTTCATTTATATAACAATTCATTTGCCGGACCACTCGAGGTCCTTTACCGTTTCTTGGAGTTCTTCAGTAACTTTGATTGGGAAAGTTTTTGTGTTAGCCTATGGGGTCCTGTACCCATTAGTTCACTTCCGGATGTAACAGCTGAACCGCCCCGAAAGGACAGTGGAGAGTTGCTGCTTAGCAAATTGTTTCTTGATGCTTGTAGCTCCGTGTATGCTGTTTTTCCCAGTGGCCAGGAAAACCAAGGGCAGCCTTTTGTTTCCAAACATTTTAATGTTATTGATCCGTTACGTGTAAACAACAACCTTGGACGTAGTGTAAGCAAAGGTAATTTCTTTAGGATACGCAGTGCATTTGCATTCGGGGCCAAAAGGCTGGCAAGATTACTCGATTGCCCTGAAGAAAGCATTGTGTTTGAAGTAAATCAGTTCTTTTTGAATACATGGGACCGGCATGGTAGTGGCGTTCGACCCGATGCACCAAGGACTGAGGTTTTGCGCTTGAGATTGTCAACCCCAGACCGGCCACTTGGGTCCGAAAATCTCAAAAACAGTTCAAGTTACAAAAGCCAAAACTCTTGTGGAAACTTGAACAGCTCAAGGAATTCTGATCAGATTGTACAGAGAGTTAGTTCTAATCAGGTTATTACGCATACTGATAGGGGTCAGAGAAATTTTAAACCTGATAATAACTTACTGAATGACATCCAGGGAAGGTTTCTTTTTGCAAGAACACGCTCTAGCCCTGAACTTACCGACACATATGGTGAAGTATCTTCTCAAGGGAGGTGTAACCAAGCACCAGAAAGTGGGTCCCTCCAGGCTGACTCAAACAGTGGTTTGAATAGCTATCACCATAACAGGAGGAAGAACCTTGGGTCTGAAATTTCACCCACCCATAGTGGTCGATCTTCAAACGATGATCCTTTAAACAGTGGTATAAATACCTATCCTCGAGACTCGGGCTTAGGGTCTATGAGTGAAGAACTTTCTTCCTCCCTAGGGATGCATCAAGAAGAGCAAGATCTTGTGAACATGATGGCTTCTTCTGGTGTTCACGGTTTTAATGGCCAGGTTCATATGCCAATGAATTTAGCTTCGGGCCATTTACCTTTTCCTATATCAGCGTCGATTTTAGCTTCAATGGGATATGCTCAGAGAAATATGGGTGGAATGGTTCCTACAAATATTCCATTGCTCGACCCTTCTTTTTCGAATATGCAATTTCCTCACGGTTTGGTTTCTCCGCCAATAACCCATTATTTCTCGGGTGTTGGAATGTCTTCAAATTCAGAAGATTCGATTGATCAAGGTAATGCAAACTTTGTTCCTGCGGAAATGAATTCCAGGGAGGCTGATCATGAATTCTGGCAGGGGCAAGATGTGAACTCTACCGAAGGTTTTGACTCCGAGAATGTGAATTTCGAGAGGCTTTATTTAGATGATAAGCCACAGTTGAGTTCTTCAGCAGGTTTATATGTTCCCCCATCTCGGGCTATGAGGGGTCAACATAAATATGCTAAGGAAAAACGAGGGTACATTAGGGACAATAATCAAGAAAATATCCAAGAAAATAGAGGAAGTGAGGTTCACTCTGATGAACGAACGACAAGTTCTAGGTTCTCATCTGCTGCTCACAGTAGAAGTAAAACTCCGTCCGAGAGTTCCTGGGATGAACCGTCTATAAAGGTGTCAAAGTTAACGAAGGAAAAACGAGGAAAGAAAACAGTTCCTGCAGAGCCATCTGTTTATGGTAAAGGTAAACTAATTTCCGAGCACGTCTCTAATCAGTCGCAGGAGGATGACCTGGACTGGAATTCAATTCGAAACATGGGAAGTGAAACTGGAGAAAGAAGCTCTGGAACTCATTCAGTTGCTTCTTTGCATGTTACTAGGCATAACTTACCTGGCTATGAGCCAGCTCAGACTAGTGGGTCAGATTCAATGATACCCATGGGTCCAATGCTATTGGGTCCCGGAACTCGGCAAAGAATGATGGATAATAGCTCTGGTGGGGTTGTTCCGTTTGCATTTTATCCTACTGGGCCACCAGTTCCATTCCTAACAATGCTTCCGGTTTACAATATTCCACCTGGCGCTGGAACTTCTGAGGCAACAACTACCCATTATGGTGGCGATGAGAGTCTCGATAATAGCGATTCTCATAAAAGATTTGACTCCTCTGAGGTTATTGATCAATCCGAGGATTTAAACACTGTCAATACGACATCTGATCAACGAATGTTGGATATTCTCCACAGTGATTTCGATAGCCACTGGAAAAACTTACAATTTGGACGGTTTTGCCAAAATCCACAACCCCAGGGGCCTATGGTTTATCCTTCCCCTGTAATGGTACCGCCTAACTATTTACAGGGCCGTTTCCCATGGGATGGTCCTGGGAGACCTATAGCGACCAACACGAACCTCTTCTCTCAGCTTATGAGTTATGGGCCTCGTATTGTTCCCATTGCAGCTCCACTGCAGTCGGTTTCTAATAGACCTCCCAATGTTTATCAACGGTATGTGGATGATTTGCCAAGATATCGTAGTGGGACCGGGACTTACCTTCCAAATCCTAAGGTTACTGCTAGGGACCAGCATTCTTCAGGTAACCGAAGGGGGAACTACAACTATGATAGAAGTGACAACCACGGTGACAGAGAAGGGAACTGGAATAGGAATTCAAAAACACGAGCCGCTGGCCGAAACCACAATCGCAATCAAAACGACAAGTCGAGTACGAGGTTGGACCGGTTAACCACTGGTGACAACCGAGCAGACCGATCATGGAACTCATACAGACACGATACATTTCCTTCATACCAGTCCCAAACCGGTGGTCCATTACGCCCAAACTCCAGTCATAGTGGTCCTCCGAATGCTTCATACAGTATGTATCCTGTGCCAGCAGTGAACCATCCACAAAGTGGACTGTCGTCAAATGGACCGAATGTTCCATCTGTTGTGATGCTGTATCCCTATGAGCATAATAATGCTAGTAGCTATAGTTTGCATCCTCCCGAACAGCTTGAATTTGGGTCTATAGGTAGAGTGGGTTTCTCAGGTATGAACGAACAATCACAGATAAGTGAGGGAAGTCAAGCAAGGGGAGCATTTGAGGAACATATGTTCCATGGGGTCTCTGCCCAACGGTCTTCACAAGATCAGCCGTCTTCTCCCCATCATCCAAGGTAA

Network for GWHGAAZE031493

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0106

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01909.24	NTP_transf_2	76	143	0.00024

Protein Sequence

>GWHPAAZE031512
MGEHEEWAQPSGLLPNGLLPNAGPLIRVFDSERWLKAEERTAELVACIQPNQPSEERRNAVADYVQRLIMKCFPCQVFTFGSVPLKTYLPDGDIDLTAFSNNQNLKDTWASEVRDMLENEEKNENAEFHVKEVQYIQAEVKIIKCLVENIVVDISFNQLGGLCTLCFLEEVDHLINQNHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLVLYIFHLYNNSFAGPLEVLYRFLEFFSNFDWESFCVSLWGPVPISSLPDVTAEPPRKDSGELLLSKLFLDACSSVYAVFPSGQENQGQPFVSKHFNVIDPLRVNNNLGRSVSKGNFFRIRSAFAFGAKRLARLLDCPEESIVFEVNQFFLNTWDRHGSGVRPDAPRTEVLRLRLSTPDRPLGSENLKNSSSYKSQNSCGNLNSSRNSDQIVQRVSSNQVITHTDRGQRNFKPDNNLLNDIQGRFLFARTRSSPELTDTYGEVSSQGRCNQAPESGSLQADSNSGLNSYHHNRRKNLGSEISPTHSGRSSNDDPLNSGINTYPRDSGLGSMSEELSSSLGMHQEEQDLVNMMASSGVHGFNGQVHMPMNLASGHLPFPISASILASMGYAQRNMGGMVPTNIPLLDPSFSNMQFPHGLVSPPITHYFSGVGMSSNSEDSIDQGNANFVPAEMNSREADHEFWQGQDVNSTEGFDSENVNFERLYLDDKPQLSSSAGLYVPPSRAMRGQHKYAKEKRGYIRDNNQENIQENRGSEVHSDERTTSSRFSSAAHSRSKTPSESSWDEPSIKVSKLTKEKRGKKTVPAEPSVYGKGKLISEHVSNQSQEDDLDWNSIRNMGSETGERSSGTHSVASLHVTRHNLPGYEPAQTSGSDSMIPMGPMLLGPGTRQRMMDNSSGGVVPFAFYPTGPPVPFLTMLPVYNIPPGAGTSEATTTHYGGDESLDNSDSHKRFDSSEVIDQSEDLNTVNTTSDQRMLDILHSDFDSHWKNLQFGRFCQNPQPQGPMVYPSPVMVPPNYLQGRFPWDGPGRPIATNTNLFSQLMSYGPRIVPIAAPLQSVSNRPPNVYQRYVDDLPRYRSGTGTYLPNPKVTARDQHSSGNRRGNYNYDRSDNHGDREGNWNRNSKTRAAGRNHNRNQNDKSSTRLDRLTTGDNRADRSWNSYRHDTFPSYQSQTGGPLRPNSSHSGPPNASYSMYPVPAVNHPQSGLSSNGPNVPSVVMLYPYEHNNASSYSLHPPEQLEFGSIGRVGFSGMNEQSQISEGSQARGAFEEHMFHGVSAQRSSQDQPSSPHHPR

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016779	molecular_function	nucleotidyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.551
	SRR3591706	second leaf	6.395
	SRR3591707	mature leaf	7.243
	SRR3591708	Shoot apex	8.926
	SRR3591709	Stem	8.369
	SRR3591710	White floral bud	9.981
	SRR3591711	White flower	14.660
	SRR3591712	Green floral bud	9.155
	SRR3591713	Yellow flower	13.392
SRP173429	SRR8316895	Juvenile bud stage	5.148
	SRR8316896	Juvenile bud stage	6.143
	SRR8316897	Juvenile bud stage	2.161
	SRR8316894	Third green stage	3.520
	SRR8316900	Third green stage	7.290
	SRR8316901	Third green stage	6.607
	SRR8316898	Complete white stage	2.369
	SRR8316899	Complete white stage	8.441
	SRR8316903	Complete white stage	5.796
	SRR8316902	Silver flowering stage	3.612
	SRR8316904	Silver flowering stage	6.543
	SRR8316905	Silver flowering stage	2.455
	SRR8316906	Gold flowering stage	9.547
	SRR8316907	Gold flowering stage	8.759
	SRR8316908	Gold flowering stage	9.147
SRP132670	SRR6706286	Control	6.587
	SRR6706287	Light intensity 50%	6.703
	SRR6706288	Light intensity 20%	7.026
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.120
	CNS0095593	Slightly white alabastrum(diploid) 2	3.080
	CNS0095594	Slightly white alabastrum(diploid) 3	2.991
	CNS0095595	Whole white alabastrum(diploid) 2	3.046
	CNS0095596	Whole white alabastrum(diploid) 3	2.416
	CNS0095597	Whole white alabastrum(diploid) 4	2.915
	CNS0095598	Silvery flower (diploied) 1	6.872
	CNS0095599	Silvery flower (diploied) 2	4.627
	CNS0095600	Silvery flower (diploied) 3	11.076
	CNS0095601	Golden flower (diploid) 1	4.510
	CNS0095602	Golden flower (diploid) 2	11.726
	CNS0095603	Golden flower (diploid) 3	11.677
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.014
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.951
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.997
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.531
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.078
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.138
	CNS0095610	Silvery flower (tetraploid) 1	8.261
	CNS0095611	Silvery flower (tetraploid) 2	10.771
	CNS0095612	Silvery flower (tetraploid) 3	8.843
	CNS0095613	Golden flower (tetraploid) 1	4.638
	CNS0095614	Golden flower (tetraploid) 2	8.156
	CNS0095615	Golden flower (tetraploid) 3	13.231
CRA001975	CRR073297	Stem 1	9.341
	CRR073298	Stem 2	7.236
	CRR073299	Stem 3	6.460
	CRR073300	Leaf 1	8.416
	CRR073301	Leaf 2	6.046
	CRR073302	Leaf 3	5.742
	CRR073303	Juvenile bud 1	5.106
	CRR073304	Juvenile bud 2	5.015
	CRR073305	Juvenile bud 3	8.456
	CRR073306	Third green 1	4.041
	CRR073307	Third green 2	2.442
	CRR073308	Third green 3	3.965
	CRR073309	Second white 1	4.399
	CRR073310	Second white 2	6.093
	CRR073311	Second white 3	8.515
	CRR073312	Silver flowering 1	9.242
	CRR073313	Silver flowering 2	10.766
	CRR073314	Silver flowering 3	5.748
	CRR073315	Gold flowering 1	3.319
	CRR073316	Gold flowering 2	5.153
	CRR073317	Gold flowering 3	3.702
	CRR073318	Tawny withering 1	6.189
	CRR073319	Tawny withering 2	5.662
	CRR073320	Tawny withering 3	6.119