Gene detail

Detail information of GWHGAAZE031497

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011093040.1	0	PREDICTED: cyclic nucleotide-gated ion channel 1-like [Sesamum indicum]
COG	YP_006439308.1	3E-24	putative transcriptional regulator, Crp/Fnr family
Swissprot	tr\|O65717\|CNGC1_ARATH	0	Cyclic nucleotide-gated ion channel 1
trEMBL	tr\|A0A061G269\|A0A061G269_THECC	0	Cyclic nucleotide gated channel 1 isoform 1 {ECO:0000313\|EMBL:EOY23483.1}
TAIR10	AT5G53130.1	6E-137	cyclic nucleotide gated channel 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	59747183	59750174	+
GWHAAZE00000009	mRNA	59747183	59750174	+
GWHAAZE00000009	exon	59747183	59747493	+
GWHAAZE00000009	exon	59747701	59747812	+
GWHAAZE00000009	exon	59748079	59748315	+
GWHAAZE00000009	exon	59748670	59749025	+
GWHAAZE00000009	exon	59749868	59750174	+
GWHAAZE00000009	CDS	59747183	59747493	+
GWHAAZE00000009	CDS	59747701	59747812	+
GWHAAZE00000009	CDS	59748079	59748315	+
GWHAAZE00000009	CDS	59748670	59749025	+
GWHAAZE00000009	CDS	59749868	59750174	+

Transcript Sequence
>GWHTAAZE031533 ATGAATCGGATGTATCAGGTAGTTGGAGCCTTCTGGTACTTGTTCTCAATAGAAAGGGAAGATAGTTGCTGGCGTATTGCATCGGACAAATTTAACCATAGTTATGATGACCTATATTGTGGAGAACATCGTTCAAATGATCTTGCATATCTATTTGAGTCTTGCCCTCTTCTCAAACCCGATGAAATTAAAAATTCAACAGATTTTAACTTCGGCATTTTCCTTGATGCTCTTCACTCTCGTGTGGTGGAAAGAAGAGATTTCCCGCGAAAATTTTTCTACTGCTTCTGGTGGGGCTTGCGAAATTTAAGTTCGCTTGGACAAGGCCTCAATACAAGTACATATGTTTGGGAGATTCTCTTTGCCGTCTTCATTGCCATCCTTGGATTGGTTCTATTTTCGTTGCTTATTGGCAACATGCAGAAATATCTGCAGTCTATAACTGTTAGAGTAGAAGAAATGAGGGTAAAAAGGAGAGATGCAGAGCAGTGGATGGCTCACCGTATGCTCCCCGAGAATCTGAGGGAGAGGCTTAGAAGGTACGAACAATACAGATGGCAACAAACCCGAGGAGTTGAAGAAGAATCTCTACTTCGTAACCTTCCTAAGGACCTTAGGAGGGACATAAAGCGCCATCTTTGCTGGGATTTACTCACGAGGGTACCAATGTTTGAAAAAGTAATGAATGACCAACTGCTGGATGGCATGTGTGACCGTCTTAAACCAGTTCTTTACACGCAAAAGAGCTCCATAGTTCGTGAGGGGGATCCAGTTGATGAGATGCTGTTTGTAATGAGGGGGAGTATACTGACAATGACGACAGGAGGGGGAAGAACTGGATTCTTTAACTCGGTTGTTCTCAAGGCAGGTGACTTTTGTGGAGACGAGCTGCTTACATGGGCTTTGGATCCCAATTCTTCCAATAGTCTTCCCCTCTCAACCAGAACAGCAGAGTCCATAACAGATGTTGAGGGTTTTGCTCTAACATCTGACGACCTTAAGTTTGTCGCCGCCCAGTTCTACTCGCAGCAGTGGAGGACATGGGGGGCCTGTTTTATACAAGCAGCATGGCGGCGACACTGTAGGAGGAAGCACGAAAAGTCTTTGCACGAGGAAGAAGATAGACTGAAGGATGCATTAGCAAATGCAAGTGATACAACCTCACCAGGCCTTGGTGCAACCATTTATGCATCAAGGTTTGCAGCCAATGCACTGCGTGCTCTGAGGCGAAATCATTCGCATAGTCCCAAATTGCCCACCAAGTTACCTCCTCTATTGCTTCAGAAGCCAGCGGAGCCTGATTTTAGTGCCCAAGAACGTTAA

Network for GWHGAAZE031497

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00520.32	Ion_trans	7	151	1.40E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05391	CNGC	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006811	biological_process	ion transport
GO:0055085	biological_process	transmembrane transport
GO:0016020	cellular_component	membrane
GO:0005216	molecular_function	ion channel activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.433
	SRR3591706	second leaf	17.192
	SRR3591707	mature leaf	54.756
	SRR3591708	Shoot apex	6.994
	SRR3591709	Stem	15.415
	SRR3591710	White floral bud	9.491
	SRR3591711	White flower	13.957
	SRR3591712	Green floral bud	11.522
	SRR3591713	Yellow flower	8.313
SRP173429	SRR8316895	Juvenile bud stage	17.599
	SRR8316896	Juvenile bud stage	25.089
	SRR8316897	Juvenile bud stage	10.612
	SRR8316894	Third green stage	4.269
	SRR8316900	Third green stage	6.324
	SRR8316901	Third green stage	9.115
	SRR8316898	Complete white stage	2.593
	SRR8316899	Complete white stage	16.040
	SRR8316903	Complete white stage	4.929
	SRR8316902	Silver flowering stage	4.734
	SRR8316904	Silver flowering stage	5.503
	SRR8316905	Silver flowering stage	3.883
	SRR8316906	Gold flowering stage	24.369
	SRR8316907	Gold flowering stage	14.473
	SRR8316908	Gold flowering stage	27.337
SRP132670	SRR6706286	Control	11.089
	SRR6706287	Light intensity 50%	11.017
	SRR6706288	Light intensity 20%	8.093
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.438
	CNS0095593	Slightly white alabastrum(diploid) 2	8.018
	CNS0095594	Slightly white alabastrum(diploid) 3	10.973
	CNS0095595	Whole white alabastrum(diploid) 2	5.696
	CNS0095596	Whole white alabastrum(diploid) 3	2.281
	CNS0095597	Whole white alabastrum(diploid) 4	7.092
	CNS0095598	Silvery flower (diploied) 1	14.909
	CNS0095599	Silvery flower (diploied) 2	17.628
	CNS0095600	Silvery flower (diploied) 3	8.720
	CNS0095601	Golden flower (diploid) 1	29.168
	CNS0095602	Golden flower (diploid) 2	17.448
	CNS0095603	Golden flower (diploid) 3	16.218
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.361
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.256
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.910
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.804
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.151
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.595
	CNS0095610	Silvery flower (tetraploid) 1	13.628
	CNS0095611	Silvery flower (tetraploid) 2	12.482
	CNS0095612	Silvery flower (tetraploid) 3	7.712
	CNS0095613	Golden flower (tetraploid) 1	7.790
	CNS0095614	Golden flower (tetraploid) 2	13.354
	CNS0095615	Golden flower (tetraploid) 3	3.961
CRA001975	CRR073297	Stem 1	7.359
	CRR073298	Stem 2	6.268
	CRR073299	Stem 3	3.162
	CRR073300	Leaf 1	3.178
	CRR073301	Leaf 2	3.178
	CRR073302	Leaf 3	2.548
	CRR073303	Juvenile bud 1	1.990
	CRR073304	Juvenile bud 2	3.061
	CRR073305	Juvenile bud 3	2.166
	CRR073306	Third green 1	1.078
	CRR073307	Third green 2	0.564
	CRR073308	Third green 3	1.303
	CRR073309	Second white 1	1.085
	CRR073310	Second white 2	2.851
	CRR073311	Second white 3	3.895
	CRR073312	Silver flowering 1	6.936
	CRR073313	Silver flowering 2	4.651
	CRR073314	Silver flowering 3	3.974
	CRR073315	Gold flowering 1	21.598
	CRR073316	Gold flowering 2	35.808
	CRR073317	Gold flowering 3	14.935
	CRR073318	Tawny withering 1	15.180
	CRR073319	Tawny withering 2	27.993
	CRR073320	Tawny withering 3	10.306