Gene detail

Detail information of GWHGAAZE031498

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHN20391.1	0	Histone-lysine N-methyltransferase ATX3 [Glycine soja]
COG	YP_003280830.1	1E-18	nuclear protein SET
Swissprot	tr\|Q9SUE7\|ATX4_ARATH	2E-166	Histone-lysine N-methyltransferase ATX4
trEMBL	tr\|A0A059CJ16\|A0A059CJ16_EUCGR	0	Uncharacterized protein {ECO:0000313\|EMBL:KCW78181.1}
TAIR10	AT4G27910.1	8E-148	SET domain protein 16

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	59757000	59774118	-
GWHAAZE00000009	mRNA	59757000	59774118	-
GWHAAZE00000009	exon	59773336	59774118	-
GWHAAZE00000009	exon	59771828	59771883	-
GWHAAZE00000009	exon	59771553	59771742	-
GWHAAZE00000009	exon	59770567	59770689	-
GWHAAZE00000009	exon	59770392	59770460	-
GWHAAZE00000009	exon	59770223	59770291	-
GWHAAZE00000009	exon	59770048	59770139	-
GWHAAZE00000009	exon	59769846	59769956	-
GWHAAZE00000009	exon	59768699	59768823	-
GWHAAZE00000009	exon	59768406	59768551	-
GWHAAZE00000009	exon	59767754	59767858	-
GWHAAZE00000009	exon	59767184	59767248	-
GWHAAZE00000009	exon	59765796	59766018	-
GWHAAZE00000009	exon	59765368	59765424	-
GWHAAZE00000009	exon	59765192	59765281	-
GWHAAZE00000009	exon	59764866	59764952	-
GWHAAZE00000009	exon	59763748	59763822	-
GWHAAZE00000009	exon	59763363	59763463	-
GWHAAZE00000009	exon	59760132	59760514	-
GWHAAZE00000009	exon	59757000	59757424	-
GWHAAZE00000009	CDS	59773336	59774118	-
GWHAAZE00000009	CDS	59771828	59771883	-
GWHAAZE00000009	CDS	59771553	59771742	-
GWHAAZE00000009	CDS	59770567	59770689	-
GWHAAZE00000009	CDS	59770392	59770460	-
GWHAAZE00000009	CDS	59770223	59770291	-
GWHAAZE00000009	CDS	59770048	59770139	-
GWHAAZE00000009	CDS	59769846	59769956	-
GWHAAZE00000009	CDS	59768699	59768823	-
GWHAAZE00000009	CDS	59768406	59768551	-
GWHAAZE00000009	CDS	59767754	59767858	-
GWHAAZE00000009	CDS	59767184	59767248	-
GWHAAZE00000009	CDS	59765796	59766018	-
GWHAAZE00000009	CDS	59765368	59765424	-
GWHAAZE00000009	CDS	59765192	59765281	-
GWHAAZE00000009	CDS	59764866	59764952	-
GWHAAZE00000009	CDS	59763748	59763822	-
GWHAAZE00000009	CDS	59763363	59763463	-
GWHAAZE00000009	CDS	59760132	59760514	-
GWHAAZE00000009	CDS	59757000	59757424	-

Transcript Sequence
>GWHTAAZE031534 ATGGCGGACGTTGAGAGGTGCAAGCTGGAGGTATATGACAACGACACGTGTTCATTGAATCAGAAGAAAGAGACGACAGATGGGTTTTATCCAGTTCCAATTAGGGCAATTGATCAAATTCTCGTCAACAAATTTGGAAATTCATCGACCTCGTTAGTAAAATCTTCTAAAGGCCGAGTCCACGTTCTTCCGTCCCGATTCAGAGATTCGGTTATCAATTCATTAAAGAAGGAAAGATCGAAATTTGCCAATCAAGAATCATGTTCTGGTAATGTTGAAGTTGTTATCTCAAATAAGAAGAGAATGAATTGCGAAAATGGTTATTCTGGTCGGGAATTACGCAAGAAACAGAAACTAGAAAGTAAGTTTCATTTGCAAATTGGTGATAAATTGGAAGGTGAAGTGGGTTGTATAGGTCACAAGGAAAATGGGAGTATAATGTGCAGTTCTTCTAGTTCAAGAAGTTGTATAACATCAATTCACGATGGAAGTTCTTCATTTTTGTTAGACACTAATGGGTGTCAGCCGAGTTTGCTCAATAAGGGTAGAGAAGGGGTGAAATCTTCCAACAAGAAGGTTGTTGAGAAGAAGGAGGATTATTATAGGCCAGAGGATTTTGTGATGAATGATATAGTGTGGGCAAAATGTGGGAAGAAGTACCCAGCTTGGCCAGGTATTGTGATCGACCCTCTATGGCAAGCGCCTGAGACTGTTCGGAGGGCTTGTGTTCCTGGCACTATTTGTGTCATGTTTTATGGGTATTCTAAAAATAGAAAGCAAAGGGACTATGCATGGGTGAAGGATGGAATGATCTTTCCCTTTCAAGAGTACATGGACAGGTTTTGCGGGCAGACAAACTTGTATGGAAGCAAGCCAAGTGATTTTCATATGGCAATAGAGGAGGCATATTTAACCGACAATGGCTACATTGATGTAGGCCCTGGGACAGGGGAGGAAAAAACAAATCCCAGTGAAATTCAAGAAGGGACTGGTTCAAATAAGGACCAGGATTACTCCTCTCATAATCAGGATGCATATGATAAGGACACATGCCCCTGCGATAGCTGTGGGTTGATTCTTCCATCCAAAACAATGAAGAAAATAAAGGGCACAACTTCTAAAGCTCAGTTTTTTTGTGGACATTGTGCTAAGTTACGGAAATCTAAACAATATTGTGGCATATGCAAGAAGATTTGGCATCACTCAGATGGCGGCAGTTGGGTATGTTGTGATGGTTGTGATGTATGGGTACATGCTGAGTGTGCTAAATTTTCCAGCAAGCATTTAAAGAATCTGGAGGACACTGATTATTATTGCCCTGAATGCAAAGCAAAGACTAGTAATGACTTGTCTATCTCAGAAAAGTGTCAACCAAAACTTGGTGACAGTTCCTCGAACCAGCCAACAGAAACCAGTGGAGAAACTGTGGTACCAGACAAGGTAGCCGTTGTATGCAATGGCATGGAAGGGGTGTATTATCCAAGTGTCCATTTATGTCAAATAGCCGTCCATCAAGAATGCTATGGAGTGAGAAATGCCCAGGATTTTACTTCGTGGGTTTGTAGAGCTTGTGAAACTCCTGATGTCGAGAGGGAATGCTGCCTCTGCCCTGTAAAAGGGGGTGCTTTGAAGCCAACTGATGTTAATACCTTGTGGGTACATGTCACTTGTGCATGGTTTCGGCCTGAAGTTGTTTTTCCAAATGATGAGAAAATGGAGCCGGCTGTTGGGCTTCTTAGAATTCCATCAAACTCTTTTGTGAAGGCATGTGTAATCTGCAAGCAGATTCATGGTTCTTGTACTCAGTGTTGCAAGTGTGCTACGTATTTTCATGCAATGTGTGCTTCTCGAGCTGGGTATAGCATGGAATTGCATTGCTCGGAGAAGTGTGGGAGGGAAATAACCAAATGGGTGTCATATTGTGCTGTTCACAGGGCTCCTAAAGCAGATAATGTGTTAGTCATACAGACTCCCTCTGGGGTTTTCAGTGCGAAAAACTTATTTCAAAAGCAGAATCAAGAACAGTGCTTCAAAGCGACAAGGCTCGTCTCTTGTAATAAGAGAATCCAACTTTCTGATTCGTCATCAACTGTTGACAAGAACGATTCTGACCTTTCTGCAGCACGCTGTCGCATCTTTACAAGATCAAACAATAAGGATGTTGAAGATTTGAATATTTTTGCTACATTCAATGAACGGCTTAACCATTTGCAGCGAATGGAAAATAATCGGGTTTGTTTTGGTAAATCTGGAATACACGGATGGGGCCTCTTTGCTAGGCGGAGCATTCAAGAAGGAGAAATGGTTCTTGAGTATCGTGGTGAGCAAGTAAGGCGCAGTGTTGCAGATTTAAGGGAGGCACGCTACCGATTAGAGCACAAAGATTGTTATCTTTTCAAGATCAGCGAGGAAATTGTTATTGATGCCACAAATAAGGGGAACATAGCACGCTTAATCAACCACTCTTGCAATCCCAATTGCTATGCAAGGATAGTGAGTACGGGAGAAGAAAAGAACCGGATTGTTCTTATAGCTAAAACCAATGTTTCTGTTGGTGACGAGTTGACGCGTCTTTTGGACTTGAACCTTACAGGCACTCCTTTTGAGGTGGCTCTTTATAAAAACTTTACTTTTATTGTATGTCCTTCTGAGATTGTCCAGTCTCTCACTGTTATTGATTGTTTGAGTAATTCAACAAACAGTACACTCGCAACTACTTCGGTGAATATTGCAAGATCAATGACGTACGCTTGTCAGGAAATTTTTACTGCGCGGATTCCGGAATCATTCCCGGGCCAATATGAGGAAGCGTTCTTTGCTGATCTTGGTGAAGATCTTGTTTTGAAATGGAGTGTGCCTGATTGTGAAGAGTGTGAAGCGAATGGTGGTACTTGTGGCTACAAGAATGGCACTAGCAGAGAGATTGCATGTCTCTATGATCAGAAAAAAGGAAGGATGAGAGGTCTGAGTATCTTCAAGATCATTGCATTATCCATTGCACTACCAGCCATCACTAGTTCCTTTTGCCTCGCAATGTTGATGTGCTATATAGACACAAGGCGTCGCCGCAATAATAATATCTTGAACGGCGCCGGTGCCACAGTAACACCTGATACTATGACTATGTCGACACTAGGTCTCGACGGGCCCACCATCGAATCATACACGCAAGTGATCTTAGGTGAAAGCAAGCGTCTACCGGGAGGACCCAATGGCAACACGTGTCCCATTTGTTTATCAGAGTACAATGCTAAAGAGACAGTAAGGTGCATGCCTGAGTGTCAACATTGCTTCCATAGCAATTGCGTTGATGAGTGGCTAAGATTGAAGGGCACTTGTCCTGTTTGCAGGAATTCTCCTTCCCCTGCATGCTAG

Network for GWHGAAZE031498

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00855.18	PWWP	207	302	3.70E-14
PF00628.30	PHD	391	444	6.30E-09
PF13831.7	PHD_2	499	525	2.50E-09
PF13832.7	zf-HC5HC2H_2	532	644	1.00E-26
PF00856.29	SET	754	856	2.10E-15
PF13639.7	zf-RING_2	1073	1117	1.20E-11

Protein Sequence

>GWHPAAZE031517
MADVERCKLEVYDNDTCSLNQKKETTDGFYPVPIRAIDQILVNKFGNSSTSLVKSSKGRVHVLPSRFRDSVINSLKKERSKFANQESCSGNVEVVISNKKRMNCENGYSGRELRKKQKLESKFHLQIGDKLEGEVGCIGHKENGSIMCSSSSSRSCITSIHDGSSSFLLDTNGCQPSLLNKGREGVKSSNKKVVEKKEDYYRPEDFVMNDIVWAKCGKKYPAWPGIVIDPLWQAPETVRRACVPGTICVMFYGYSKNRKQRDYAWVKDGMIFPFQEYMDRFCGQTNLYGSKPSDFHMAIEEAYLTDNGYIDVGPGTGEEKTNPSEIQEGTGSNKDQDYSSHNQDAYDKDTCPCDSCGLILPSKTMKKIKGTTSKAQFFCGHCAKLRKSKQYCGICKKIWHHSDGGSWVCCDGCDVWVHAECAKFSSKHLKNLEDTDYYCPECKAKTSNDLSISEKCQPKLGDSSSNQPTETSGETVVPDKVAVVCNGMEGVYYPSVHLCQIAVHQECYGVRNAQDFTSWVCRACETPDVERECCLCPVKGGALKPTDVNTLWVHVTCAWFRPEVVFPNDEKMEPAVGLLRIPSNSFVKACVICKQIHGSCTQCCKCATYFHAMCASRAGYSMELHCSEKCGREITKWVSYCAVHRAPKADNVLVIQTPSGVFSAKNLFQKQNQEQCFKATRLVSCNKRIQLSDSSSTVDKNDSDLSAARCRIFTRSNNKDVEDLNIFATFNERLNHLQRMENNRVCFGKSGIHGWGLFARRSIQEGEMVLEYRGEQVRRSVADLREARYRLEHKDCYLFKISEEIVIDATNKGNIARLINHSCNPNCYARIVSTGEEKNRIVLIAKTNVSVGDELTRLLDLNLTGTPFEVALYKNFTFIVCPSEIVQSLTVIDCLSNSTNSTLATTSVNIARSMTYACQEIFTARIPESFPGQYEEAFFADLGEDLVLKWSVPDCEECEANGGTCGYKNGTSREIACLYDQKKGRMRGLSIFKIIALSIALPAITSSFCLAMLMCYIDTRRRRNNNILNGAGATVTPDTMTMSTLGLDGPTIESYTQVILGESKRLPGGPNGNTCPICLSEYNAKETVRCMPECQHCFHSNCVDEWLRLKGTCPVCRNSPSPAC

Gene family

Gene family	subfamily
Transcription Factors Family	PHD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.041
	SRR3591706	second leaf	6.487
	SRR3591707	mature leaf	5.114
	SRR3591708	Shoot apex	9.462
	SRR3591709	Stem	9.103
	SRR3591710	White floral bud	11.373
	SRR3591711	White flower	9.752
	SRR3591712	Green floral bud	9.762
	SRR3591713	Yellow flower	9.156
SRP173429	SRR8316895	Juvenile bud stage	7.533
	SRR8316896	Juvenile bud stage	12.269
	SRR8316897	Juvenile bud stage	5.719
	SRR8316894	Third green stage	4.454
	SRR8316900	Third green stage	11.205
	SRR8316901	Third green stage	11.644
	SRR8316898	Complete white stage	3.257
	SRR8316899	Complete white stage	9.760
	SRR8316903	Complete white stage	6.484
	SRR8316902	Silver flowering stage	4.152
	SRR8316904	Silver flowering stage	7.624
	SRR8316905	Silver flowering stage	2.873
	SRR8316906	Gold flowering stage	11.168
	SRR8316907	Gold flowering stage	10.213
	SRR8316908	Gold flowering stage	11.006
SRP132670	SRR6706286	Control	13.257
	SRR6706287	Light intensity 50%	12.636
	SRR6706288	Light intensity 20%	13.874
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.432
	CNS0095593	Slightly white alabastrum(diploid) 2	8.911
	CNS0095594	Slightly white alabastrum(diploid) 3	8.686
	CNS0095595	Whole white alabastrum(diploid) 2	10.254
	CNS0095596	Whole white alabastrum(diploid) 3	10.858
	CNS0095597	Whole white alabastrum(diploid) 4	12.222
	CNS0095598	Silvery flower (diploied) 1	7.183
	CNS0095599	Silvery flower (diploied) 2	6.990
	CNS0095600	Silvery flower (diploied) 3	7.973
	CNS0095601	Golden flower (diploid) 1	5.901
	CNS0095602	Golden flower (diploid) 2	8.065
	CNS0095603	Golden flower (diploid) 3	8.252
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.240
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.893
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.311
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.528
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.598
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.236
	CNS0095610	Silvery flower (tetraploid) 1	12.109
	CNS0095611	Silvery flower (tetraploid) 2	9.321
	CNS0095612	Silvery flower (tetraploid) 3	10.395
	CNS0095613	Golden flower (tetraploid) 1	6.532
	CNS0095614	Golden flower (tetraploid) 2	9.052
	CNS0095615	Golden flower (tetraploid) 3	9.668
CRA001975	CRR073297	Stem 1	12.376
	CRR073298	Stem 2	10.052
	CRR073299	Stem 3	6.606
	CRR073300	Leaf 1	13.179
	CRR073301	Leaf 2	9.789
	CRR073302	Leaf 3	5.084
	CRR073303	Juvenile bud 1	5.501
	CRR073304	Juvenile bud 2	2.868
	CRR073305	Juvenile bud 3	3.992
	CRR073306	Third green 1	2.466
	CRR073307	Third green 2	1.681
	CRR073308	Third green 3	2.616
	CRR073309	Second white 1	1.315
	CRR073310	Second white 2	3.308
	CRR073311	Second white 3	2.195
	CRR073312	Silver flowering 1	1.862
	CRR073313	Silver flowering 2	1.235
	CRR073314	Silver flowering 3	1.955
	CRR073315	Gold flowering 1	2.093
	CRR073316	Gold flowering 2	3.191
	CRR073317	Gold flowering 3	1.118
	CRR073318	Tawny withering 1	5.392
	CRR073319	Tawny withering 2	4.679
	CRR073320	Tawny withering 3	4.305