Gene detail

Detail information of GWHGAAZE031508

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004229991.1	1.967E-136	PREDICTED: transcription factor bHLH13-like [Solanum lycopersicum]
Swissprot	tr\|Q9ZPY8\|AIB_ARATH	2E-72	Transcription factor ABA-INDUCIBLE bHLH-TYPE
trEMBL	tr\|K4AZZ4\|K4AZZ4_SOLLC	7E-137	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc01g096050.2.1}
TAIR10	AT1G01260.3	6E-63	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	59936554	59937534	-
GWHAAZE00000009	mRNA	59936554	59937534	-
GWHAAZE00000009	exon	59936862	59937534	-
GWHAAZE00000009	exon	59936554	59936831	-
GWHAAZE00000009	CDS	59936862	59937534	-
GWHAAZE00000009	CDS	59936554	59936831	-

Transcript Sequence
>GWHTAAZE031544 ATGAATGTGATCCCAACAATCTTCGGACAGGATTTGAACTCGGGCCGTTCTCAGTTTAGGGAAAAACTTGTTGTTAGGAAGGCAGACGAAAGGCAAGTGCAATCCAATGGAAATGGGTTTCCTTTCCCAAACAGTCGAAATGGTGTCCATCCTCCAAATTGGTCACAATTCAACGGTGTGAAGCAAGGCCATGTCATCGAAATTCAAAGCCCTCATACCCCACATTTACAAGAGCTTGTCAACGGAGTTCGTGAAGAATTTCGGGTCAACAATTTCAGACATCAAAAACCGGCACAACCAACGCAAATTGATTTCACAGGGGCCTCTACTGGTTCCTCTTTAGTTTCAAGGCCGGTGAGCATTGAGTCTGAGCATTCGGATATCGAGGCGGTTTGCAAGGAAGAGGAGAACGGGATAGTTGACGAAAAGAGGCCTCGAAAACGGGGCCGTAAACCGGCAAACGGAAGAGAAGAGCCTCTCAATCATGTTGAAGCGGAGAGGCAAAGGCGAGAGAAACTAAACCAACGGTTCTATGCATTGCGGGCCGTTGTGCCCAATATCTCTAAGATGGACAAAGCTTCTTTATTGGGAGACGCCATTGCATACATAACCGAGCTTCAAAATAAGGTCAAGGACATGGAATTGGAGAGGGAAAAGCTCGGAACTAGTTCAAAAATTCAAAACCAAGTTTCCGATATGGAAATCCAAACCGTCCGTGATGAAGTGATCGTACGGGTGACATGCCCTTTGGATTCTCACCCTGTATCAAGAATCATCAAATCTCTGAATGAGGCACAGGTTACTGTCGTTGAATCGAAACTCACCGCAGGGAATGATTTGGTGTTTCACACGTTCATCATCAAGTCCCACGGATCGGAACAGGTGACCAAGGAGAAGTTGATAGCGGCATTTTCGCGGGAATCCAGTTCCTTTCAGCAGTCAATTGGGTAA

Network for GWHGAAZE031508

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.27	HLH	161	207	6.00E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	50.592
	SRR3591706	second leaf	19.958
	SRR3591707	mature leaf	32.491
	SRR3591708	Shoot apex	27.770
	SRR3591709	Stem	54.773
	SRR3591710	White floral bud	36.949
	SRR3591711	White flower	39.380
	SRR3591712	Green floral bud	29.616
	SRR3591713	Yellow flower	27.603
SRP173429	SRR8316895	Juvenile bud stage	32.179
	SRR8316896	Juvenile bud stage	25.076
	SRR8316897	Juvenile bud stage	30.613
	SRR8316894	Third green stage	4.418
	SRR8316900	Third green stage	7.009
	SRR8316901	Third green stage	11.774
	SRR8316898	Complete white stage	10.871
	SRR8316899	Complete white stage	42.067
	SRR8316903	Complete white stage	13.456
	SRR8316902	Silver flowering stage	11.790
	SRR8316904	Silver flowering stage	9.596
	SRR8316905	Silver flowering stage	5.647
	SRR8316906	Gold flowering stage	23.204
	SRR8316907	Gold flowering stage	22.498
	SRR8316908	Gold flowering stage	19.282
SRP132670	SRR6706286	Control	11.731
	SRR6706287	Light intensity 50%	12.799
	SRR6706288	Light intensity 20%	10.353
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	44.540
	CNS0095593	Slightly white alabastrum(diploid) 2	64.574
	CNS0095594	Slightly white alabastrum(diploid) 3	58.099
	CNS0095595	Whole white alabastrum(diploid) 2	48.007
	CNS0095596	Whole white alabastrum(diploid) 3	17.057
	CNS0095597	Whole white alabastrum(diploid) 4	35.243
	CNS0095598	Silvery flower (diploied) 1	75.801
	CNS0095599	Silvery flower (diploied) 2	95.784
	CNS0095600	Silvery flower (diploied) 3	47.308
	CNS0095601	Golden flower (diploid) 1	107.085
	CNS0095602	Golden flower (diploid) 2	96.723
	CNS0095603	Golden flower (diploid) 3	93.173
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.207
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.761
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.218
	CNS0095607	Whole white alabastrum(tetraploid) 1	21.252
	CNS0095608	Whole white alabastrum(tetraploid) 2	24.114
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.512
	CNS0095610	Silvery flower (tetraploid) 1	22.099
	CNS0095611	Silvery flower (tetraploid) 2	16.297
	CNS0095612	Silvery flower (tetraploid) 3	28.981
	CNS0095613	Golden flower (tetraploid) 1	19.772
	CNS0095614	Golden flower (tetraploid) 2	21.761
	CNS0095615	Golden flower (tetraploid) 3	22.446
CRA001975	CRR073297	Stem 1	59.579
	CRR073298	Stem 2	49.162
	CRR073299	Stem 3	47.262
	CRR073300	Leaf 1	53.499
	CRR073301	Leaf 2	69.178
	CRR073302	Leaf 3	39.495
	CRR073303	Juvenile bud 1	46.231
	CRR073304	Juvenile bud 2	75.834
	CRR073305	Juvenile bud 3	47.878
	CRR073306	Third green 1	60.472
	CRR073307	Third green 2	48.611
	CRR073308	Third green 3	53.861
	CRR073309	Second white 1	45.886
	CRR073310	Second white 2	52.020
	CRR073311	Second white 3	33.934
	CRR073312	Silver flowering 1	48.638
	CRR073313	Silver flowering 2	41.867
	CRR073314	Silver flowering 3	44.227
	CRR073315	Gold flowering 1	39.898
	CRR073316	Gold flowering 2	105.093
	CRR073317	Gold flowering 3	59.374
	CRR073318	Tawny withering 1	87.213
	CRR073319	Tawny withering 2	276.946
	CRR073320	Tawny withering 3	85.583