Gene detail

Detail information of GWHGAAZE031525

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009588677.1	0	PREDICTED: CDPK-related kinase 3 [Nicotiana tomentosiformis]
COG	YP_007468874.1	2E-28	serine/threonine protein kinase
Swissprot	tr\|Q9ZUZ2\|CAMK3_ARATH	0	CDPK-related kinase 3
trEMBL	tr\|A0A068ULZ8\|A0A068ULZ8_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_35 {ECO:0000313\|EMBL:CDP08633.1}
TAIR10	AT2G46700.1	0	CDPK-related kinase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	60291106	60298734	-
GWHAAZE00000009	mRNA	60291106	60298734	-
GWHAAZE00000009	exon	60297750	60298734	-
GWHAAZE00000009	exon	60295069	60295199	-
GWHAAZE00000009	exon	60294849	60294905	-
GWHAAZE00000009	exon	60294675	60294783	-
GWHAAZE00000009	exon	60294435	60294513	-
GWHAAZE00000009	exon	60294043	60294339	-
GWHAAZE00000009	exon	60293845	60293954	-
GWHAAZE00000009	exon	60293379	60293486	-
GWHAAZE00000009	exon	60293172	60293234	-
GWHAAZE00000009	exon	60291341	60291490	-
GWHAAZE00000009	exon	60291106	60291258	-
GWHAAZE00000009	five_prime_UTR	60298293	60298734	-
GWHAAZE00000009	CDS	60297750	60298292	-
GWHAAZE00000009	CDS	60295069	60295199	-
GWHAAZE00000009	CDS	60294849	60294905	-
GWHAAZE00000009	CDS	60294675	60294783	-
GWHAAZE00000009	CDS	60294435	60294513	-
GWHAAZE00000009	CDS	60294043	60294339	-
GWHAAZE00000009	CDS	60293845	60293954	-
GWHAAZE00000009	CDS	60293379	60293486	-
GWHAAZE00000009	CDS	60293172	60293234	-
GWHAAZE00000009	CDS	60291341	60291490	-
GWHAAZE00000009	CDS	60291106	60291258	-

Transcript Sequence
>GWHTAAZE031561 GAGATTTATCAATTTCCTTATTGTATTAATTTCTATCTTCCCTTGAAATAAATAAATATTTTTTCTACTCCCCTCCCACGCACATCCCCCACACCCAGCCCTTTCAGTTTCTTATTACCAGGCATCAACCGTGTCTACATCATCATCATCATTATCATAATATATATAACTCTCCCCTTCTCTTTCTCAATTCTATTTTTTTTCATTCCATTTTTTTATCGTTTTCTCGCCGTTCGATCCTCTCTCTTCTTAATTTTAATCTTTATTTTTGTCTCTCTCCGGCACTAATCTTTCAGATCCGTACTGCGGGCTCATCTCCACCGTCGGATGCATACTAGTTTCTGACTTTTGACTTGTTCACTTTCAAAGTCTCTAGAGAGAGAAAGACAGTCTAGAGAGAGAGTTTGTCCGTATCTGACCGCCGCTACTGACTTAACTTCCGATGGGGCAGTGCTACGGCAAGACCCTTCCGACAACCACAATCGTCTCAGCCGGTGAAGACGATCAGCCACCTCAGACGCCGGTTACGTCATCCTCCAACAACGGCGCCGTCAACGTTCCATCGGTGAAGAACACTCCGGCCCGATCGTCGGCGGCTGCGAGTCAATGGCCGAGTCCGTATCCGTACGGCGGAGGATCGAGTCCGCTCCCCGGCGGAGTGACGCCTTCTCCGGCGAGGTCTACGCCTCGGAGATTCTTCAAGCGGCCGTTTCCTCCGCCGTCCCCGGCTAAGCACATCAAAGCGTCGTTAGCGAGGCGGTTCGGTCATAACAAACCTAGGGAAGGTCCGATCCCCGAGGACGGAGCCACGGAGACTGATCATTCACTTGATAAGAATTTCGGATATAATAAGAATTTTGGAGCCAAGTATGAGCTGGGGAAGGAGATAGGGCGAGGGCATTTTGGTCATACTTGTCACGCTAGAGGAAGGAAGGGCGAGCTAAAGGACCAATCTGTAGCTGTCAAAATTATCTCGAAGGCGAAGATGACAACAGCGATATCAATTGAAGATGTACGTAGAGAAGTAAAAATATTGAAAGCTCTATCTGGGCACAGGCATTTGGTGAAGTTTTATGATGCATGCGAGGATGTCAACAACGTGTACATAGTCATGGAATTGTGTGAAGGGGTGAACTACTTGACAGAATATTGTCAAGGTAAAGTTAAATATATAGGAGGAAGATACTCAGAAGAGGATGCAAAGCTCATTGTTGTTCAAATTTTAAATGTGGTTGCATTTTGTCATCTTCAAGGCGTGGTGCACCGTGACTTAAAGCCCGAGAATTATCTTTTCACCTCGAGAAGTGAAGATGCTGATATGAAGCTTATTGATTTTGGTCTTTCAGACTTTATCAAGCCAGATGAAAGACTTAATGATATTGTTGGAAGTGCTTACTATGTGGCACCAGAAGTGCTCCACAGATCTTATAGTGTGGAAGCGGATATTTGGAGCATCGGTGTTATAACCTATATTTTGTTGTGTGGAAGCAGACCGTTCTGGGCAAGAACAGAGTCGGGAATTTTTCGGTCAGTACTAAGAGCTGATCCTAATTTCGATGATATTCCTTGGCCTTCTGTATCTCCTGAAGCCAAGGATTTTGTAAAAAGGCTTTTAAACAAGGACTACAGGAAAAGGATGAGTGCTGCTCAAGCTCTGACTCACCCATGGCTACGGACTGAAAACCATCCCGTTCCTTTGGATATATTGATTTATAAGTTAGTCAAGTCTTACCTTCAAGCTACACCTTTCAAACGTGCAGCATTAAGGGCGCTCTCTAAAGCTTTAACTGAGGACGAATTGGTTTATCTTCGAGCTCAATTTACACTAATGGAACCTAATAAAGATGGGCGTGTCTCTCTTGATAACTTCAAGATGGCTCTTCTGCAAAATGGAACTGATGCGATGAAGGAGTCGAGGGTTCCTGAAATCCTGAATGCCATGGCACCACTTTCCTACAGAAAGATAGACTTTGAAGAGTTTTGTGCAGCAGCAATAAGCATATATCAACTGGAAGCTATTGAAGGTTGGGAACAGATTGCATATACAGCGTTTGAACATTTTGAACGAGATGCTAACCGAATTATCTCAAACAAGTTTCTTGATTTGCAGGAACTAAATGTCGGACCTACAGCACATTCAATTCTCAAAGACTGGATCAGAAACGACGGGAAACTCAGTTTGCTTGGTTATACCAAATTTTTGCATGGAGTGACACTTCGCAACTTAAATACGAGACACTGA

Network for GWHGAAZE031525

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	143	410	4.50E-66

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CDPK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005509	molecular_function	calcium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.601
	SRR3591706	second leaf	6.680
	SRR3591707	mature leaf	4.185
	SRR3591708	Shoot apex	12.129
	SRR3591709	Stem	14.098
	SRR3591710	White floral bud	13.642
	SRR3591711	White flower	14.014
	SRR3591712	Green floral bud	12.549
	SRR3591713	Yellow flower	9.249
SRP173429	SRR8316895	Juvenile bud stage	11.143
	SRR8316896	Juvenile bud stage	14.469
	SRR8316897	Juvenile bud stage	8.015
	SRR8316894	Third green stage	4.916
	SRR8316900	Third green stage	11.625
	SRR8316901	Third green stage	11.236
	SRR8316898	Complete white stage	7.319
	SRR8316899	Complete white stage	17.578
	SRR8316903	Complete white stage	9.831
	SRR8316902	Silver flowering stage	7.149
	SRR8316904	Silver flowering stage	9.542
	SRR8316905	Silver flowering stage	3.993
	SRR8316906	Gold flowering stage	17.897
	SRR8316907	Gold flowering stage	15.142
	SRR8316908	Gold flowering stage	20.853
SRP132670	SRR6706286	Control	11.064
	SRR6706287	Light intensity 50%	10.409
	SRR6706288	Light intensity 20%	10.102
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.869
	CNS0095593	Slightly white alabastrum(diploid) 2	8.218
	CNS0095594	Slightly white alabastrum(diploid) 3	8.026
	CNS0095595	Whole white alabastrum(diploid) 2	6.103
	CNS0095596	Whole white alabastrum(diploid) 3	4.304
	CNS0095597	Whole white alabastrum(diploid) 4	4.949
	CNS0095598	Silvery flower (diploied) 1	11.036
	CNS0095599	Silvery flower (diploied) 2	11.862
	CNS0095600	Silvery flower (diploied) 3	11.874
	CNS0095601	Golden flower (diploid) 1	9.089
	CNS0095602	Golden flower (diploid) 2	13.986
	CNS0095603	Golden flower (diploid) 3	14.304
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.837
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.642
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.446
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.283
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.458
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.335
	CNS0095610	Silvery flower (tetraploid) 1	13.754
	CNS0095611	Silvery flower (tetraploid) 2	10.874
	CNS0095612	Silvery flower (tetraploid) 3	17.110
	CNS0095613	Golden flower (tetraploid) 1	5.852
	CNS0095614	Golden flower (tetraploid) 2	10.802
	CNS0095615	Golden flower (tetraploid) 3	9.198
CRA001975	CRR073297	Stem 1	9.778
	CRR073298	Stem 2	8.191
	CRR073299	Stem 3	8.120
	CRR073300	Leaf 1	7.514
	CRR073301	Leaf 2	8.022
	CRR073302	Leaf 3	5.389
	CRR073303	Juvenile bud 1	6.547
	CRR073304	Juvenile bud 2	5.184
	CRR073305	Juvenile bud 3	8.099
	CRR073306	Third green 1	9.835
	CRR073307	Third green 2	5.254
	CRR073308	Third green 3	7.366
	CRR073309	Second white 1	8.766
	CRR073310	Second white 2	16.260
	CRR073311	Second white 3	16.734
	CRR073312	Silver flowering 1	11.009
	CRR073313	Silver flowering 2	11.120
	CRR073314	Silver flowering 3	5.493
	CRR073315	Gold flowering 1	3.193
	CRR073316	Gold flowering 2	4.185
	CRR073317	Gold flowering 3	3.509
	CRR073318	Tawny withering 1	10.366
	CRR073319	Tawny withering 2	11.365
	CRR073320	Tawny withering 3	12.540