Detail information of GWHGAAZE031544


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002267626.30PREDICTED: vacuolar protein sorting-associated protein 8 homolog isoform X1 [Vitis vinifera]
trEMBLtr|F6I2Y1|F6I2Y1_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB61298.1}
TAIR10AT4G00800.10transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene6074794660763215+
GWHAAZE00000009mRNA6074794660763215+
GWHAAZE00000009exon6074794660749685+
GWHAAZE00000009exon6075016360750474+
GWHAAZE00000009exon6075058560750812+
GWHAAZE00000009exon6075092360751046+
GWHAAZE00000009exon6075111760751274+
GWHAAZE00000009exon6075135160751840+
GWHAAZE00000009exon6075237960752443+
GWHAAZE00000009exon6075255260752653+
GWHAAZE00000009exon6075280460752946+
GWHAAZE00000009exon6075372860753783+
GWHAAZE00000009exon6075581660756480+
GWHAAZE00000009exon6075675460756941+
GWHAAZE00000009exon6075701360757319+
GWHAAZE00000009exon6075815960758229+
GWHAAZE00000009exon6075863360758891+
GWHAAZE00000009exon6075897960759088+
GWHAAZE00000009exon6075962960759962+
GWHAAZE00000009exon6076016260760190+
GWHAAZE00000009exon6076100160761091+
GWHAAZE00000009exon6076195560762380+
GWHAAZE00000009exon6076287660763098+
GWHAAZE00000009exon6076319060763215+
GWHAAZE00000009CDS6074794660749685+
GWHAAZE00000009CDS6075016360750474+
GWHAAZE00000009CDS6075058560750812+
GWHAAZE00000009CDS6075092360751046+
GWHAAZE00000009CDS6075111760751274+
GWHAAZE00000009CDS6075135160751840+
GWHAAZE00000009CDS6075237960752443+
GWHAAZE00000009CDS6075255260752653+
GWHAAZE00000009CDS6075280460752946+
GWHAAZE00000009CDS6075372860753783+
GWHAAZE00000009CDS6075581660756480+
GWHAAZE00000009CDS6075675460756941+
GWHAAZE00000009CDS6075701360757319+
GWHAAZE00000009CDS6075815960758229+
GWHAAZE00000009CDS6075863360758891+
GWHAAZE00000009CDS6075897960759088+
GWHAAZE00000009CDS6075962960759962+
GWHAAZE00000009CDS6076016260760190+
GWHAAZE00000009CDS6076100160761091+
GWHAAZE00000009CDS6076195560762380+
GWHAAZE00000009CDS6076287660763098+
GWHAAZE00000009CDS6076319060763215+
Transcript Sequence

Network for GWHGAAZE031544

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12816.8Vps8101912033.10E-55
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
K20178VPS8 Autophagy - yeast map04138

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf15.239
SRR3591706second leaf7.158
SRR3591707mature leaf10.656
SRR3591708Shoot apex9.622
SRR3591709Stem16.330
SRR3591710White floral bud14.533
SRR3591711White flower17.407
SRR3591712Green floral bud9.851
SRR3591713Yellow flower12.842
SRP173429 SRR8316895Juvenile bud stage 7.129
SRR8316896Juvenile bud stage 9.948
SRR8316897Juvenile bud stage 5.368
SRR8316894Third green stage 4.975
SRR8316900Third green stage 11.244
SRR8316901Third green stage 10.518
SRR8316898Complete white stage 3.853
SRR8316899Complete white stage 10.795
SRR8316903Complete white stage 9.420
SRR8316902Silver flowering stage5.220
SRR8316904Silver flowering stage10.123
SRR8316905Silver flowering stage4.062
SRR8316906Gold flowering stage 14.912
SRR8316907Gold flowering stage 13.570
SRR8316908Gold flowering stage 16.068
SRP132670SRR6706286Control11.734
SRR6706287Light intensity 50%10.980
SRR6706288Light intensity 20%11.781
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.889
CNS0095593Slightly white alabastrum(diploid) 25.715
CNS0095594Slightly white alabastrum(diploid) 34.903
CNS0095595Whole white alabastrum(diploid) 25.070
CNS0095596Whole white alabastrum(diploid) 33.882
CNS0095597Whole white alabastrum(diploid) 44.466
CNS0095598Silvery flower (diploied) 19.690
CNS0095599Silvery flower (diploied) 28.049
CNS0095600Silvery flower (diploied) 315.280
CNS0095601Golden flower (diploid) 17.302
CNS0095602Golden flower (diploid) 215.365
CNS0095603Golden flower (diploid) 314.872
CNS0095604Slightly white alabastrum(tetraploid) 16.538
CNS0095605Slightly white alabastrum(tetraploid) 25.278
CNS0095606Slightly white alabastrum(tetraploid) 311.689
CNS0095607Whole white alabastrum(tetraploid) 14.741
CNS0095608Whole white alabastrum(tetraploid) 23.617
CNS0095609Whole white alabastrum(tetraploid) 39.221
CNS0095610Silvery flower (tetraploid) 118.598
CNS0095611Silvery flower (tetraploid) 218.050
CNS0095612Silvery flower (tetraploid) 318.813
CNS0095613Golden flower (tetraploid) 17.397
CNS0095614Golden flower (tetraploid) 213.928
CNS0095615Golden flower (tetraploid) 314.232
CRA001975CRR073297Stem 17.640
CRR073298Stem 26.711
CRR073299Stem 34.644
CRR073300Leaf 17.930
CRR073301Leaf 26.970
CRR073302Leaf 35.592
CRR073303Juvenile bud 14.865
CRR073304Juvenile bud 23.844
CRR073305Juvenile bud 37.516
CRR073306Third green 14.446
CRR073307Third green 22.638
CRR073308Third green 34.126
CRR073309Second white 13.426
CRR073310Second white 26.338
CRR073311Second white 38.354
CRR073312Silver flowering 16.140
CRR073313Silver flowering 23.971
CRR073314Silver flowering 34.651
CRR073315Gold flowering 11.946
CRR073316Gold flowering 22.579
CRR073317Gold flowering 31.559
CRR073318Tawny withering 14.518
CRR073319Tawny withering 24.409
CRR073320Tawny withering 34.775