Gene detail

Detail information of GWHGAAZE031553

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002276357.1	0	PREDICTED: triacylglycerol lipase SDP1-like [Vitis vinifera]
COG	YP_693301.1	8E-75	hypothetical protein ABO_1581
Swissprot	tr\|Q9LZA6\|SDP1_ARATH	0	Triacylglycerol lipase SDP1
trEMBL	tr\|F6HLN9\|F6HLN9_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55295.1}
TAIR10	AT5G04040.1	0	Patatin-like phospholipase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	60875537	60878973	-
GWHAAZE00000009	mRNA	60875537	60878973	-
GWHAAZE00000009	exon	60877543	60878973	-
GWHAAZE00000009	exon	60877131	60877274	-
GWHAAZE00000009	exon	60875537	60876481	-
GWHAAZE00000009	CDS	60877543	60878973	-
GWHAAZE00000009	CDS	60877131	60877274	-
GWHAAZE00000009	CDS	60875537	60876481	-

Transcript Sequence
>GWHTAAZE031589 ATGGATATAACTAATGAGGCTACTGTGGCTCCATTTTCAATTGGACCTTCCACAATTGTGGGTCGTGTTATTGCATTGCGAATCTTGTACAGTAAGTCAATGTCTCATCTTAGGCATCAGATCTTTCATATGCTGTTATCTTACCTACATAGAGCAAAGAATTGCGCGACGGACTATATAAAACCCATGATCTCGTGGTTTCATCCACGCAACCCGCAAGGGATATTGGTAATGGTGACACTAATAGCTTTTATTTTAAAGCGATACACTAATGTAAAAGCAAGGGCCAAATTGGCTTATAGGAGGAAGTTTTGGAGGAATATGATGAGAGGTGCATTGACCTATGAGGAATGGGCTCATGGTGCTAAGATGCTTGAGAAAGAGACCCCCAAAATGAATGAATCAAATCTATACGATGAAGAACTCGTGAGGAATAAGCTCCAAGAGCTTTGGCAACGTAGGCAAGAGGGTTCTCTCAGAGATATTATATTTTACATGCGAGCCGACCTTGTCAGAAATCTTGGCAATATGTGCAACCCAGAGCTTCACAAGTGGAGGCTTCAAGTGCCTAAACTCATAAAGGAATACATCGACGAGGTCTCCTTTCAGCTGAGAATGGTTTGCGACTCAGATTCCGAGGAGCTTCGATTAGAGGAGAAACTTGCTTTTATGCACGAGACGAGGCATGCTTTTGGGAGGACAGCTTTGCTTTTAAGTGGGGGTGCTTCCCTTGGAGCTTTCCACGTGGGTGTGGTGAAAACGTTGGTAGAGCATAAGCTTTTGCCCCGTATCATAGCTGGTTCTAGTGTTGGTTCCATCATGTGCTCTATTGTTGCTACTAGATCCTGGCCCGAGCTCCAACTCTTCTTTGAGGATTCTTGGCGCTCTTTGCAGTTTTTCGACCAAATGGGTGGCATTTTTGCAGTTGTTAAGAGGGTTATGACACGAGGTGCAGTTCATGAGATCGGACAGTTGCAGATGATGTTAAGGAATCTCACAAGTAATCTTACATTTCAAGAAGCTTATGACATGACAGGTCGAATACTTGGGATTACAGTTTGCTCCCCAAGGAAGCATGAACCACCCAGATGCCTTAACTACTTGACTTCACCTCATGTTGTTATTTGGAGTGCGGTGACGGCCTCTTGTGCCTTTCCTGGTCTTTTTGAAGCTCAAGAACTAATGGCAAAGGATAGAAGTGGCGAAATTGTGCCTTACCACCCACCGTTTCACAGGGGACCGGAAGAGGCTTCTGGCACATCTGTTCGTCGGTGGAGGGATGGTAGCTTGGAGATTGATTTGCCAATGATGCAATTGAAAGAGCTCTTCAATGTCAATCATTTTATTGTGAGTCAAGCAAATCCGCATATTGCGCCTCTGCTGAGGATAAAGGAGGTGATTAGAGCTTATGGAGGCAACTTTGCTGCAAAGCTTGCTCATCTGGTGGAGATGGAGGTGAAACACAGATGCAACCAGATACTGGAACTTGGTTTTCCTTTAGGTGGACTTGCGAAGCTGTTTGCTCAAGATTGGGAGGGTGATGTCACTATTGTAATGCCTGCCACCTTGGCTCAGTACTCAAAAATCATACAGAATCCATCTCATTTAGAGCTTCAAAAAGCAGCAAACCAAGGCAGAAGGTGCACTTGGGAGAAGCTCTCAGCCATAAAAGCCAATTGTGGGATTGAGCTTGCTCTTGATGAATCTGTTGCAATACTCAGTCACATGCGTCGACTAAAGAGGAGTGCCGAAAGAGCCGGTGCTGCCTCTCAAGGCCTAAACTCCACTGCTCGCTTCAACACGCCCAAAAGAATCCCATCCTGGAACCTTATTGCGCGAGATAACTCAACAGGCTCCCTTGAAGAATTGCTCCTCTCAGATGTCGCTTCTTCACTCCATCAGGGAGTGAACAGCAGGCCCACCGGACAATCCAACCAGAATAGGTGGGCCCAACGTAACATCCAAGATGGAAGTGACAGTGAATCTGAGGGCGCCAATATCAATTCTTGGACGAGGTCCGGCGGGCCCTTGATGAGGACAACTTCTGCGGATATGTTCATTGACTTCTTCCAAAATTTGGAAAATGGAATGATGGTTTACCCCAACAACATTAGTCCGCAGGCAGATGGAGTTCCACATTATCAAAGCCCGAGTGTAGTGACAGCGGATAGAAGCTCAGATACAGATTTGGACCAGAGGGATCTCAATAACGGAGTTGCTAGGAGCAGTTCTAGCATTATGGTGGCCGAGGGCGACTTCTTGCAGCCTGAGAGGATTCATAATGGGATCTTGTTCAATGTAGTAAAGAAGGAAGTCTTGTCCCCATCACATCGAAGCCATGAGTCAGGAAATAGCTCATTTGCCGAATGCATGCAACTCGATTGCCCGGACAAGGATATGGATTCGAGCTCGACGTCTGAGGTTGGCGACAATGACTCGGCTTTGGAAAATGGTCTGAATGAGACGGGGTCTGCTTGCGACCCCGAGGCTTGTTTGGTTACAGATGATGCTAATGGTTAG

Network for GWHGAAZE031553

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF11815.9	DUF3336	100	229	1.00E-25
PF01734.23	Patatin	236	428	1.60E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14674	TGL4	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Steroid biosynthesis	map00100
		Glycerolipid metabolism	map00561
		Glycerophospholipid metabolism	map00564
		Ether lipid metabolism	map00565
		Arachidonic acid metabolism	map00590
		Linoleic acid metabolism	map00591
		alpha-Linolenic acid metabolism	map00592

Gene Ontology

GO term	Ontology	Name
GO:0006629	biological_process	lipid metabolic process
GO:0004806	molecular_function	triglyceride lipase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.750
	SRR3591706	second leaf	3.900
	SRR3591707	mature leaf	7.897
	SRR3591708	Shoot apex	3.375
	SRR3591709	Stem	12.075
	SRR3591710	White floral bud	7.550
	SRR3591711	White flower	13.620
	SRR3591712	Green floral bud	2.570
	SRR3591713	Yellow flower	16.437
SRP173429	SRR8316895	Juvenile bud stage	7.532
	SRR8316896	Juvenile bud stage	7.745
	SRR8316897	Juvenile bud stage	4.330
	SRR8316894	Third green stage	2.213
	SRR8316900	Third green stage	4.557
	SRR8316901	Third green stage	5.197
	SRR8316898	Complete white stage	5.184
	SRR8316899	Complete white stage	10.741
	SRR8316903	Complete white stage	9.921
	SRR8316902	Silver flowering stage	7.975
	SRR8316904	Silver flowering stage	10.068
	SRR8316905	Silver flowering stage	5.975
	SRR8316906	Gold flowering stage	30.429
	SRR8316907	Gold flowering stage	26.129
	SRR8316908	Gold flowering stage	25.582
SRP132670	SRR6706286	Control	8.117
	SRR6706287	Light intensity 50%	7.252
	SRR6706288	Light intensity 20%	6.589
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.612
	CNS0095593	Slightly white alabastrum(diploid) 2	3.487
	CNS0095594	Slightly white alabastrum(diploid) 3	4.306
	CNS0095595	Whole white alabastrum(diploid) 2	3.747
	CNS0095596	Whole white alabastrum(diploid) 3	1.422
	CNS0095597	Whole white alabastrum(diploid) 4	3.816
	CNS0095598	Silvery flower (diploied) 1	11.437
	CNS0095599	Silvery flower (diploied) 2	18.437
	CNS0095600	Silvery flower (diploied) 3	21.830
	CNS0095601	Golden flower (diploid) 1	27.529
	CNS0095602	Golden flower (diploid) 2	33.588
	CNS0095603	Golden flower (diploid) 3	31.247
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.406
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.168
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.519
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.864
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.332
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.247
	CNS0095610	Silvery flower (tetraploid) 1	18.681
	CNS0095611	Silvery flower (tetraploid) 2	19.998
	CNS0095612	Silvery flower (tetraploid) 3	11.114
	CNS0095613	Golden flower (tetraploid) 1	12.277
	CNS0095614	Golden flower (tetraploid) 2	19.250
	CNS0095615	Golden flower (tetraploid) 3	54.245
CRA001975	CRR073297	Stem 1	6.895
	CRR073298	Stem 2	6.315
	CRR073299	Stem 3	5.918
	CRR073300	Leaf 1	5.570
	CRR073301	Leaf 2	5.799
	CRR073302	Leaf 3	4.447
	CRR073303	Juvenile bud 1	6.356
	CRR073304	Juvenile bud 2	10.130
	CRR073305	Juvenile bud 3	8.235
	CRR073306	Third green 1	22.563
	CRR073307	Third green 2	12.560
	CRR073308	Third green 3	17.220
	CRR073309	Second white 1	15.045
	CRR073310	Second white 2	18.790
	CRR073311	Second white 3	19.661
	CRR073312	Silver flowering 1	13.591
	CRR073313	Silver flowering 2	8.607
	CRR073314	Silver flowering 3	9.844
	CRR073315	Gold flowering 1	5.195
	CRR073316	Gold flowering 2	7.790
	CRR073317	Gold flowering 3	6.804
	CRR073318	Tawny withering 1	11.042
	CRR073319	Tawny withering 2	10.430
	CRR073320	Tawny withering 3	5.664