Gene detail

Detail information of GWHGAAZE031555

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002515094.1	0	serine/threonine-protein kinase, putative [Ricinus communis]
COG	YP_003109488.1	8E-36	serine/threonine protein kinase
Swissprot	tr\|O22932\|CIPKB_ARATH	1E-54	CBL-interacting serine/threonine-protein kinase 11
trEMBL	tr\|B9RMV5\|B9RMV5_RICCO	0	Serine/threonine-protein kinase, putative {ECO:0000313\|EMBL:EEF47078.1}
TAIR10	AT3G61960.1	5E-150	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	60893613	60900153	-
GWHAAZE00000009	mRNA	60893613	60900153	-
GWHAAZE00000009	exon	60899917	60900153	-
GWHAAZE00000009	exon	60899124	60899241	-
GWHAAZE00000009	exon	60898939	60898997	-
GWHAAZE00000009	exon	60898508	60898572	-
GWHAAZE00000009	exon	60898160	60898253	-
GWHAAZE00000009	exon	60897984	60898064	-
GWHAAZE00000009	exon	60897767	60897878	-
GWHAAZE00000009	exon	60897597	60897681	-
GWHAAZE00000009	exon	60895478	60895656	-
GWHAAZE00000009	exon	60895125	60895396	-
GWHAAZE00000009	exon	60894256	60894541	-
GWHAAZE00000009	exon	60894096	60894166	-
GWHAAZE00000009	exon	60893613	60893807	-
GWHAAZE00000009	CDS	60899917	60900153	-
GWHAAZE00000009	CDS	60899124	60899241	-
GWHAAZE00000009	CDS	60898939	60898997	-
GWHAAZE00000009	CDS	60898508	60898572	-
GWHAAZE00000009	CDS	60898160	60898253	-
GWHAAZE00000009	CDS	60897984	60898064	-
GWHAAZE00000009	CDS	60897767	60897878	-
GWHAAZE00000009	CDS	60897597	60897681	-
GWHAAZE00000009	CDS	60895478	60895656	-
GWHAAZE00000009	CDS	60895125	60895396	-
GWHAAZE00000009	CDS	60894256	60894541	-
GWHAAZE00000009	CDS	60894096	60894166	-
GWHAAZE00000009	CDS	60893613	60893807	-

Transcript Sequence
>GWHTAAZE031591 ATGGAGGGGAGAGTGATAGGGGATTACATAATGGGGAAGAGAATAGGGAGTGGTTCGTTCGCAGTGGTGTGGAAATCGAGACATAGGGCAACTGGCTTGGAAGTTGCGGTCAAGGAGATTGATAAAACTCGACTCATAAACACTTCCCCTAAAATAGCCGATAATCTCTTCAAGGAGATTTCTATTCTCTCCAATATTTGTCACCCTAACATTATTCGCCTTTTCGAAGCCATCCAGACTGAGGATAGAATTTTCCTGGTTTTGGAGTATTGTGATGGCGGTGACCTTGCTGCTTACCTTAATCAGCGTGGTAAAGTTTCAGAAGCTGTTGCTAAGCACTTTATGAGGCAATTAGCTGCAGGGCTCCAAGTTCTTAATGAGAACTGTCTCATTCATCGAGATTTGAAACCACAGAATCTCCTTCTCACAACCAATGAGGCAACACCATTGCTGAAGATCGGGGATTTTGGTTTTGCCAGGTACGTTACACCCCATGGTTTGGCTGATACTCTATGTGGGTCACCGTTATACATGGCTCCAGAGATTATTCAGAGTAGGAAGTATGACAGCAAGGCTGACTTATGGAGTGCTGGAGCAATTTTGTACCAGTTAGTGACAGGGAAGCCTCCTTTTAACGGCGATTCCCAATTGCAGCTTTTTCAGAACATTTTGAAATCTGGTGAGCTGCGATTTCCAGAAGGTGCTTTACAAGAACTACATCCAGATTGTGTTGATCTTTGCAGAAGTCTTCTACGTCAAAACCCTGGGTGGCCATGCTATTGGGAAGAATCTGTTAATATTTGTGAAATAGTGGCTGACATTTTGATGGGATTAACCCAATATGGGCTTACAGAAACAAATTTAGTTTATTCATCTGTACATGGTGAAGACAACAAGATAAAGTATAGAAAAAGTTATGCCAGCACATCAAGAGGCAAAGGTGTCGATATATTTACACCAAGTATTGCAGGTGATATGCCTACAAGGACATCTCTTGAAGATGGCACAAAATTTTCGGAGCAGCTAAGAGTTACTGATTCAATGGAGTCCATTGAAAAAGGATACGTTCTCGTCAATCCTCATTATGCATCAACTGACACTTTATCCTCCTCAATGGAGACATCCCTGCTCTATAATTCTGTCACCAGGGCTCTTAGCTTTCCACCCATTCTAAAGAATGATCACCTCAATATTTCCGTTGAAAGGCAACAAACGAAGGAGCTCGATGCTAATAATTCTACTTGGAGGGCAAAGGATCTTCAGAGCCATAGAGCTCGATCGCCATCATCAAGCACATCAACTTTTAATGCAGGTTTGTTTATAGAATCTTTTTCGGTTGAACTGGTGGTTTTGGCTATTTGGAATGAAGCTATTAATGTTTCCAGTACTTGGCTGGCCTCCAGTATGGAGGAAGGTATACCTAAATACAGTTCAGCTAATGAGTCTATACCTGTAAAAGAAGGTTCAGACTCGGGAGAAAATGTTGATTTTAGCAGGCCACGTTCTGTTTCCATGTGGGCAAAACGAGGGTTTCTTGTTGCATTCAATCGTGCCGAGAATTTATCGGATCATGTTCTGAAGACTGAAGGTATTAAGCAAATGCCAGATGCTGTAGAAATTATATTCCAGACAGCACTAGAAATTGGTAAAAGTGGTGGTGTGGATGAACTTATGGGTAACAATGACGGGGCAGTATCAGCTTACTCTAAAGCGAAGATTTTGCTGTCATTTGTTTTGGAAGAAGCAACAACACTGCCACTGACACCGAGATTCATATTAATGCCTGCTGATAGGGAGCGAATCAAGGAATACATCTGTAACTTTGAGTCTCGTCCCTCTTGCTTTGGGAAGTGA

Network for GWHGAAZE031555

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	11	255	9.40E-67

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	Group-Pl-3

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.114
	SRR3591706	second leaf	6.189
	SRR3591707	mature leaf	8.778
	SRR3591708	Shoot apex	10.647
	SRR3591709	Stem	21.304
	SRR3591710	White floral bud	13.022
	SRR3591711	White flower	15.997
	SRR3591712	Green floral bud	10.591
	SRR3591713	Yellow flower	12.031
SRP173429	SRR8316895	Juvenile bud stage	5.654
	SRR8316896	Juvenile bud stage	6.620
	SRR8316897	Juvenile bud stage	4.119
	SRR8316894	Third green stage	2.591
	SRR8316900	Third green stage	6.452
	SRR8316901	Third green stage	7.618
	SRR8316898	Complete white stage	2.771
	SRR8316899	Complete white stage	16.272
	SRR8316903	Complete white stage	6.072
	SRR8316902	Silver flowering stage	3.042
	SRR8316904	Silver flowering stage	5.544
	SRR8316905	Silver flowering stage	2.710
	SRR8316906	Gold flowering stage	6.956
	SRR8316907	Gold flowering stage	7.442
	SRR8316908	Gold flowering stage	6.700
SRP132670	SRR6706286	Control	6.079
	SRR6706287	Light intensity 50%	5.075
	SRR6706288	Light intensity 20%	5.716
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.254
	CNS0095593	Slightly white alabastrum(diploid) 2	5.353
	CNS0095594	Slightly white alabastrum(diploid) 3	7.520
	CNS0095595	Whole white alabastrum(diploid) 2	5.038
	CNS0095596	Whole white alabastrum(diploid) 3	3.761
	CNS0095597	Whole white alabastrum(diploid) 4	4.607
	CNS0095598	Silvery flower (diploied) 1	10.004
	CNS0095599	Silvery flower (diploied) 2	6.969
	CNS0095600	Silvery flower (diploied) 3	15.816
	CNS0095601	Golden flower (diploid) 1	9.906
	CNS0095602	Golden flower (diploid) 2	15.193
	CNS0095603	Golden flower (diploid) 3	15.091
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.811
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.745
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.026
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.361
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.501
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.375
	CNS0095610	Silvery flower (tetraploid) 1	16.197
	CNS0095611	Silvery flower (tetraploid) 2	15.869
	CNS0095612	Silvery flower (tetraploid) 3	6.889
	CNS0095613	Golden flower (tetraploid) 1	7.439
	CNS0095614	Golden flower (tetraploid) 2	13.174
	CNS0095615	Golden flower (tetraploid) 3	7.580
CRA001975	CRR073297	Stem 1	8.871
	CRR073298	Stem 2	6.278
	CRR073299	Stem 3	4.002
	CRR073300	Leaf 1	7.598
	CRR073301	Leaf 2	6.239
	CRR073302	Leaf 3	4.830
	CRR073303	Juvenile bud 1	6.437
	CRR073304	Juvenile bud 2	3.212
	CRR073305	Juvenile bud 3	9.229
	CRR073306	Third green 1	0.313
	CRR073307	Third green 2	0.762
	CRR073308	Third green 3	0.505
	CRR073309	Second white 1	0.913
	CRR073310	Second white 2	0.506
	CRR073311	Second white 3	0.748
	CRR073312	Silver flowering 1	0.606
	CRR073313	Silver flowering 2	0.268
	CRR073314	Silver flowering 3	0.534
	CRR073315	Gold flowering 1	8.343
	CRR073316	Gold flowering 2	14.050
	CRR073317	Gold flowering 3	5.092
	CRR073318	Tawny withering 1	9.354
	CRR073319	Tawny withering 2	7.969
	CRR073320	Tawny withering 3	9.929