Gene detail

Detail information of GWHGAAZE031592

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009759588.1	1.2563E-113	PREDICTED: aspartic proteinase CDR1-like [Nicotiana sylvestris]
Swissprot	tr\|Q6XBF8\|CDR1_ARATH	9E-88	Aspartic proteinase CDR1 (Precursor)
trEMBL	tr\|A0A022QGV8\|A0A022QGV8_ERYGU	1E-113	Uncharacterized protein {ECO:0000313\|EMBL:EYU27186.1}
TAIR10	AT1G64830.1	9E-80	Eukaryotic aspartyl protease family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	61377527	61378837	-
GWHAAZE00000009	mRNA	61377527	61378837	-
GWHAAZE00000009	exon	61377527	61378837	-
GWHAAZE00000009	CDS	61377527	61378837	-

Transcript Sequence
>GWHTAAZE031628 ATGACAACAATGTTGACATTTCACCAAATTTTCTCCATCATACTTGTAGGTACAATTCCCATTTTTTGTACCTCAAAGTCCTCACTTGTCGTAGAAGCTAAAAATGTTGGGTTCAATGTGGATCTTGTCCATCGCGATTCGCCAAAATCTCCCTTTTATAATCATTCTCTAACTCCTTCACAACGTGTGGCTGCTGCTCTACGTCGATCACTTCAGAGAATTGTACTGTTAAAGAATGGCTCAACCCCTATAATCCCAGATCTCGGGGAATTTCTCATGAAGATATCCTTCGGCACACCACCAGTTGATGTACTACCAGTTGCCGATACTGGTAGCGACCTAACATGGATACAATGCGAGCCTTGCCCTAATTGTACGAAGCAAATTAATCCTCCCATCTTTAATCCATATAATTCATTAACTTACAAAGCGGTCCCTTGTACCTCTGAACTTTGCCATTCTATGCCTGAAACTTCTTGCAATGCTACTACAAATACTTGCCACTATTCAGTCTCGTACGTAGACAAGTCCGTTAGTCATGGAGATCTTGCTACTGACATAGTTGCATTTGATCCCCCCGTTAGTACTTTCCCTCGTATCTTTTTTGGGTGTGCGAATGGCGATGCAAGATCCGGCGTAGTTGGCCTTGGTGGCGGGCCAGGTTCACTTATTTCACAAATGAGTCCTTTTATTGGTGGTAAATTCTCCTATTGCCTAGTGCCATTCGAATCAAAAAAATCCGGTAAATTTTACTTTGGTCAAACATTCCCGATTACTCATAGGACAGTTTCCACTCCCCTAGTTCCTAACTACCCAAGCACGTTCTATTACATAACACTCACAGATATCTTTGTCGGAAGCGAGAGGATAATCATCCCGGAACCACCAGGGTCCGCGGGACTTCCCAAAGAGGGAAACACGATTATCGACACAGGGACGACATTGACTAATCTTCCATTAGATATTTACAATCAATTTGAAGCCGCGATTAAAAAAGAGGTGAAATTGTCACCTGTGGATGACCCACAAGGTATACTAAGTTTGTGTTACAATACCTTAAATGAACATTTTTTCCCCGTAATCACCCTTAAGTTTCCCCTGGGCCAAGGTTTTAAGAGAGAAGATTTGAGACTGACTCCACCGAATACATTTGTTCAGACCAGTGATACTACTATGTGTTTGGCTTTTTCGCCTACTGAAAATGACAAACCAGCTGTTTTGGGAAATTTTGCACAGAAGAATATATTTGTTAGCTATGACCTAGAGAAGAAAACTGTGTCGTTTAGGCATACAGATTGTGAAAAAGAATGA

Network for GWHGAAZE031592

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0252

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14543.7	TAXi_N	91	254	1.50E-45
PF14541.7	TAXi_C	275	429	3.10E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0004190	molecular_function	aspartic-type endopeptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.088
	SRR3591706	second leaf	0.921
	SRR3591707	mature leaf	0.032
	SRR3591708	Shoot apex	0.494
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.101
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.089
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.269
	SRR8316896	Juvenile bud stage	0.117
	SRR8316897	Juvenile bud stage	0.061
	SRR8316894	Third green stage	0.082
	SRR8316900	Third green stage	0.269
	SRR8316901	Third green stage	0.195
	SRR8316898	Complete white stage	0.060
	SRR8316899	Complete white stage	0.138
	SRR8316903	Complete white stage	0.184
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.012
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.254
	SRR6706287	Light intensity 50%	0.158
	SRR6706288	Light intensity 20%	0.091
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.176
	CNS0095593	Slightly white alabastrum(diploid) 2	0.046
	CNS0095594	Slightly white alabastrum(diploid) 3	0.163
	CNS0095595	Whole white alabastrum(diploid) 2	0.133
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.029
	CNS0095598	Silvery flower (diploied) 1	0.112
	CNS0095599	Silvery flower (diploied) 2	0.091
	CNS0095600	Silvery flower (diploied) 3	0.060
	CNS0095601	Golden flower (diploid) 1	0.172
	CNS0095602	Golden flower (diploid) 2	0.122
	CNS0095603	Golden flower (diploid) 3	0.054
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.295
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.560
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.035
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.060
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.006
	CNS0095612	Silvery flower (tetraploid) 3	0.037
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.766
	CRR073298	Stem 2	0.504
	CRR073299	Stem 3	0.446
	CRR073300	Leaf 1	0.486
	CRR073301	Leaf 2	0.735
	CRR073302	Leaf 3	0.436
	CRR073303	Juvenile bud 1	0.062
	CRR073304	Juvenile bud 2	0.190
	CRR073305	Juvenile bud 3	0.269
	CRR073306	Third green 1	0.063
	CRR073307	Third green 2	0.021
	CRR073308	Third green 3	0.167
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.070
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.034
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.059