Detail information of GWHGAAZE031595


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKCW76685.14.23279E-56hypothetical protein EUGRSUZ_D010482, partial [Eucalyptus grandis]
Swissprottr|Q9SRQ6|NPC3_ARATH5E-40Non-specific phospholipase C3
trEMBLtr|A0A059CFH1|A0A059CFH1_EUCGR2E-56Uncharacterized protein {ECO:0000313|EMBL:KCW76685.1} (Fragment)
TAIR10AT3G03520.18E-34non-specific phospholipase C3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene6141887061420327+
GWHAAZE00000009mRNA6141887061420327+
GWHAAZE00000009exon6141887061419044+
GWHAAZE00000009exon6141977561420327+
GWHAAZE00000009CDS6141887061419044+
GWHAAZE00000009CDS6141977561420118+
GWHAAZE00000009three_prime_UTR6142011961420327+
Transcript Sequence

Network for GWHGAAZE031595

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01114plc Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Inositol phosphate metabolismmap00562
Glycerophospholipid metabolismmap00564
Ether lipid metabolismmap00565
Quorum sensingmap02024
Thyroid hormone signaling pathwaymap04919

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf89.699
SRR3591706second leaf4.089
SRR3591707mature leaf0.746
SRR3591708Shoot apex14.293
SRR3591709Stem24.487
SRR3591710White floral bud66.703
SRR3591711White flower35.647
SRR3591712Green floral bud9.748
SRR3591713Yellow flower33.809
SRP173429 SRR8316895Juvenile bud stage 2.249
SRR8316896Juvenile bud stage 3.016
SRR8316897Juvenile bud stage 1.693
SRR8316894Third green stage 1.861
SRR8316900Third green stage 10.546
SRR8316901Third green stage 9.243
SRR8316898Complete white stage 17.300
SRR8316899Complete white stage 26.828
SRR8316903Complete white stage 26.802
SRR8316902Silver flowering stage9.926
SRR8316904Silver flowering stage23.943
SRR8316905Silver flowering stage8.224
SRR8316906Gold flowering stage 15.397
SRR8316907Gold flowering stage 17.893
SRR8316908Gold flowering stage 24.596
SRP132670SRR6706286Control12.476
SRR6706287Light intensity 50%15.364
SRR6706288Light intensity 20%15.106
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.333
CNS0095593Slightly white alabastrum(diploid) 212.994
CNS0095594Slightly white alabastrum(diploid) 33.243
CNS0095595Whole white alabastrum(diploid) 29.584
CNS0095596Whole white alabastrum(diploid) 34.049
CNS0095597Whole white alabastrum(diploid) 412.974
CNS0095598Silvery flower (diploied) 122.263
CNS0095599Silvery flower (diploied) 224.063
CNS0095600Silvery flower (diploied) 323.368
CNS0095601Golden flower (diploid) 112.425
CNS0095602Golden flower (diploid) 215.143
CNS0095603Golden flower (diploid) 312.143
CNS0095604Slightly white alabastrum(tetraploid) 17.609
CNS0095605Slightly white alabastrum(tetraploid) 23.912
CNS0095606Slightly white alabastrum(tetraploid) 311.545
CNS0095607Whole white alabastrum(tetraploid) 111.067
CNS0095608Whole white alabastrum(tetraploid) 217.452
CNS0095609Whole white alabastrum(tetraploid) 37.145
CNS0095610Silvery flower (tetraploid) 135.174
CNS0095611Silvery flower (tetraploid) 232.228
CNS0095612Silvery flower (tetraploid) 347.936
CNS0095613Golden flower (tetraploid) 121.235
CNS0095614Golden flower (tetraploid) 234.858
CNS0095615Golden flower (tetraploid) 312.817
CRA001975CRR073297Stem 15.766
CRR073298Stem 24.646
CRR073299Stem 33.397
CRR073300Leaf 114.846
CRR073301Leaf 214.584
CRR073302Leaf 311.075
CRR073303Juvenile bud 119.211
CRR073304Juvenile bud 220.728
CRR073305Juvenile bud 325.019
CRR073306Third green 144.531
CRR073307Third green 247.870
CRR073308Third green 344.639
CRR073309Second white 125.980
CRR073310Second white 216.092
CRR073311Second white 319.807
CRR073312Silver flowering 130.353
CRR073313Silver flowering 236.329
CRR073314Silver flowering 328.176
CRR073315Gold flowering 10.654
CRR073316Gold flowering 21.060
CRR073317Gold flowering 31.355
CRR073318Tawny withering 139.480
CRR073319Tawny withering 243.360
CRR073320Tawny withering 336.181