Gene detail

Detail information of GWHGAAZE031598

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006445524.1	0	hypothetical protein CICLE_v10019144mg [Citrus clementina]
Swissprot	tr\|Q9SFU0\|SC24A_ARATH	0.000001	Protein transport protein Sec24-like At3g07100
trEMBL	tr\|V4VZ40\|V4VZ40_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR58764.1}
TAIR10	AT2G21630.1	9E-134	Sec23/Sec24 protein transport family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	61452872	61469323	+
GWHAAZE00000009	mRNA	61452872	61469323	+
GWHAAZE00000009	exon	61452872	61453096	+
GWHAAZE00000009	exon	61454025	61454378	+
GWHAAZE00000009	exon	61454458	61454514	+
GWHAAZE00000009	exon	61455839	61456012	+
GWHAAZE00000009	exon	61456839	61456998	+
GWHAAZE00000009	exon	61457305	61457355	+
GWHAAZE00000009	exon	61457477	61457558	+
GWHAAZE00000009	exon	61457670	61457741	+
GWHAAZE00000009	exon	61458430	61458505	+
GWHAAZE00000009	exon	61466413	61466490	+
GWHAAZE00000009	exon	61466645	61466806	+
GWHAAZE00000009	exon	61467471	61467730	+
GWHAAZE00000009	exon	61468508	61468616	+
GWHAAZE00000009	exon	61468787	61468891	+
GWHAAZE00000009	exon	61469180	61469323	+
GWHAAZE00000009	CDS	61452872	61453096	+
GWHAAZE00000009	CDS	61454025	61454378	+
GWHAAZE00000009	CDS	61454458	61454514	+
GWHAAZE00000009	CDS	61455839	61456012	+
GWHAAZE00000009	CDS	61456839	61456998	+
GWHAAZE00000009	CDS	61457305	61457355	+
GWHAAZE00000009	CDS	61457477	61457558	+
GWHAAZE00000009	CDS	61457670	61457741	+
GWHAAZE00000009	CDS	61458430	61458505	+
GWHAAZE00000009	CDS	61466413	61466490	+
GWHAAZE00000009	CDS	61466645	61466806	+
GWHAAZE00000009	CDS	61467471	61467730	+
GWHAAZE00000009	CDS	61468508	61468616	+
GWHAAZE00000009	CDS	61468787	61468891	+
GWHAAZE00000009	CDS	61469180	61469323	+

Transcript Sequence
>GWHTAAZE031634 ATGACGGAATTCCTGGACCTAGAATCCCAAGACGCCGTTCGAATGCCGTGGAACGTCTTGCCGGGGACAAAACAAGAAGCGGCTCAATCAATAATACCAATCTCCGCCATTTACACACCACTCAAGCCCTTCCCTAATATGCCTGTCCTCCCTTACTCCCCTCTCCGTTGCCGTAATTGCCGATCCGTCCTCAATCCCTTCGCCATCATCGATTACTCCACCAAGGTATGGATCTGCTCCTTCTGCCTCCACCGAACCACTTCCCCTCACTACCATTCGATCTCTGACGACAATCTCCCCGGCGAGCTCTTCCCACAGTACACCACTATCGAATACGAATCCGCCACTGAGAAATCTACAGTTCCGCCGGTTTTCATGTTTGTGATCGATACTTGTATGATCGAGGAAGAGATTGGTTACTTGAAATCAGCCTTGTCTAGGGCTGTGGGGATGGTGCCGGAGAATTCGCTTGTTGGATTGATTACATTTGGTACTTATGCGTGTGTTCATGAATTGGGGTTTGGGCAAATTCCAAAGGTTTATGTTTTTAAGGGGTCAAAGGAGGTGACCAAGGATCAGGATAGCATTGCAAGATTCTTGTTGCCGGCTTCTGAGTGTGAGTTTGCACTCAATTCGGTATTGGAGGAGCTTCAAAAAGATCCCTGGCCCATTCAAGCAGATCAAAGGGCAGCAAGGTGCACTGGCACAGCATTGAGTGTGGCTGCTCATTTGTTAGGAGTGTGTGTTCCAGGTTCCGGGGCACGAATTATGGCATTTTTGGGTGGGCCATCAACGGAAGGGCCGGGCTCTATTGTGTCTAAAAGTTTGTCTGAACCTATACGTTCTCACAAGGACCTGGATAAAGATTCTGTTCCCTATTATCATAAAGCTGTGAAGTTCTACGAAGGTCTTTCAAAGCAGCTTGTACATCAAGGACATGTACTTGATGTTTTTGCTTGTGCTCGACCAGTTGACTGCTGTACTTTGGGATTAGGAGAAAATACAGTTGGACCCATTCTGGAAAGCTTTGGCCACTCAGTTTTTAAGGATTCTCTAAAACGTGTTTTCCAGTCTGGTGACTTTGACCTTGGTCTATCATCAAAGGCTGACAACCATGAGGTAGTTGGTTTGAAAAATATGAAAGCAATACCTCAATTTGTGTTGGCTAGTATTCGTGGTATATTTGAGGTTAACTGCTCAAAGGATATCAAAATTCAAGGCATTATCGGTCCTTGTGCATCACTTGACAAGGACCTAATTGCTGGATTTGACCAAGAAGCAGCTGCTGTAGTCACAGCACGGCAAGTTTCATTCAAAATGGAAACTGAGGCTGAATTCGATCCGATAAGATGGCTGGATAAATCTTTAATACATATTTGTTCTCGGTTTGGCGACTACCAGAAGGACAGTCCATCTTCTTTTAGCTTATCTCCACGGTTTTCAATAGTTCCTCAGTTCATATTCCACTTACGCCGTTCTCAGTTTGTCCAGGTCTTCAATAACAGCCCAGATGAGACGGCTTACTTTAGGATGATATTGAACAGGGAAAATGTGGCTAATTCAGTAGTCATGGTTCAGCCCTCATTGATCTCTTACTCTTTTCATTCTGGACCGGAACCAGCTCTCCTTGATGTGGCTGCCATTGCTGCTGATAGGATCCTTCTTTGGATTCTTATTTCACCGTTGTGGTATTTCATGGGTCAACCATCGCCAGTGGCAAAGCTGGGTACCACGATCAACCTGAACATGAGAAAGTTGTCAAATGCCCCCTCTGGACACATTGTTTCTACTTTTGAAATGCTTCATTTTGTAAATATACTCCCTTCTCCCCGTTTTGGTCTTTTCTGCAATTCCAAATTTGTATTTGCCCAGTTGCTGCGAGCTCCTCAAGATGATGCTGATGCAATAATTAAGGAAAGATTTCCAGTACCTCGCTTAGTAATTTGTGATCAGCACGGATCCCAGGCTCGTTTTCTGCTGGCAAAACTAAATCCTTCTGCCACATACAACTCTGATGCTCCTCTTGTTCCTGGAGGGGATGTCCTCTTTACAGATGATGTGAGCTTCGAGGTGTTCTTGGATCATCTTCAACGGTTGGCTGTTCAATAG

Network for GWHGAAZE031598

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04810.16	zf-Sec23_Sec24	54	91	1.80E-13
PF04811.16	Sec23_trunk	121	356	8.00E-52
PF04815.16	Sec23_helical	424	522	4.30E-23

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14006	SEC23	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0006886	biological_process	intracellular protein transport
GO:0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0030127	cellular_component	COPII vesicle coat
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.618
	SRR3591706	second leaf	4.009
	SRR3591707	mature leaf	4.274
	SRR3591708	Shoot apex	4.782
	SRR3591709	Stem	5.015
	SRR3591710	White floral bud	5.700
	SRR3591711	White flower	6.649
	SRR3591712	Green floral bud	6.408
	SRR3591713	Yellow flower	8.730
SRP173429	SRR8316895	Juvenile bud stage	3.321
	SRR8316896	Juvenile bud stage	5.989
	SRR8316897	Juvenile bud stage	1.459
	SRR8316894	Third green stage	2.732
	SRR8316900	Third green stage	5.208
	SRR8316901	Third green stage	5.421
	SRR8316898	Complete white stage	1.872
	SRR8316899	Complete white stage	4.467
	SRR8316903	Complete white stage	5.264
	SRR8316902	Silver flowering stage	1.877
	SRR8316904	Silver flowering stage	2.294
	SRR8316905	Silver flowering stage	1.333
	SRR8316906	Gold flowering stage	4.491
	SRR8316907	Gold flowering stage	5.232
	SRR8316908	Gold flowering stage	3.903
SRP132670	SRR6706286	Control	2.983
	SRR6706287	Light intensity 50%	3.649
	SRR6706288	Light intensity 20%	3.396
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.459
	CNS0095593	Slightly white alabastrum(diploid) 2	3.365
	CNS0095594	Slightly white alabastrum(diploid) 3	2.978
	CNS0095595	Whole white alabastrum(diploid) 2	3.021
	CNS0095596	Whole white alabastrum(diploid) 3	3.157
	CNS0095597	Whole white alabastrum(diploid) 4	3.134
	CNS0095598	Silvery flower (diploied) 1	3.485
	CNS0095599	Silvery flower (diploied) 2	3.091
	CNS0095600	Silvery flower (diploied) 3	4.695
	CNS0095601	Golden flower (diploid) 1	2.833
	CNS0095602	Golden flower (diploid) 2	4.637
	CNS0095603	Golden flower (diploid) 3	4.853
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.377
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.092
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.977
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.601
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.458
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.003
	CNS0095610	Silvery flower (tetraploid) 1	6.417
	CNS0095611	Silvery flower (tetraploid) 2	4.446
	CNS0095612	Silvery flower (tetraploid) 3	6.306
	CNS0095613	Golden flower (tetraploid) 1	2.696
	CNS0095614	Golden flower (tetraploid) 2	5.709
	CNS0095615	Golden flower (tetraploid) 3	3.765
CRA001975	CRR073297	Stem 1	5.905
	CRR073298	Stem 2	5.729
	CRR073299	Stem 3	4.788
	CRR073300	Leaf 1	5.248
	CRR073301	Leaf 2	5.460
	CRR073302	Leaf 3	3.928
	CRR073303	Juvenile bud 1	3.564
	CRR073304	Juvenile bud 2	2.748
	CRR073305	Juvenile bud 3	4.781
	CRR073306	Third green 1	5.247
	CRR073307	Third green 2	2.690
	CRR073308	Third green 3	3.982
	CRR073309	Second white 1	7.857
	CRR073310	Second white 2	8.919
	CRR073311	Second white 3	11.053
	CRR073312	Silver flowering 1	9.354
	CRR073313	Silver flowering 2	9.667
	CRR073314	Silver flowering 3	7.717
	CRR073315	Gold flowering 1	2.064
	CRR073316	Gold flowering 2	2.845
	CRR073317	Gold flowering 3	2.182
	CRR073318	Tawny withering 1	4.031
	CRR073319	Tawny withering 2	2.844
	CRR073320	Tawny withering 3	3.080