Gene detail

Detail information of GWHGAAZE031609

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009759588.1	2.56799E-75	PREDICTED: aspartic proteinase CDR1-like [Nicotiana sylvestris]
Swissprot	tr\|Q3EBM5\|ASPR1_ARATH	5E-59	Probable aspartic protease At2g35615 (Precursor)
trEMBL	tr\|I1M0U6\|I1M0U6_SOYBN	4E-67	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G26940.1}
TAIR10	AT2G35615.1	1E-50	Eukaryotic aspartyl protease family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	61607272	61608304	-
GWHAAZE00000009	mRNA	61607272	61608304	-
GWHAAZE00000009	exon	61607272	61607474	-
GWHAAZE00000009	exon	61607553	61607795	-
GWHAAZE00000009	exon	61607884	61608304	-
GWHAAZE00000009	CDS	61607884	61608304	-
GWHAAZE00000009	CDS	61607553	61607795	-
GWHAAZE00000009	CDS	61607272	61607474	-

Transcript Sequence
>GWHTAAZE031645 ATGAAGATATCCTTCGGCACACCACCAGTTGATGTACTACCAGTTGCCGATACTGGTAGCGACCTAACATGGATACAATGCGAGCCTTGCCCTAATTGTACGAAGCAAATTAATCCTCCCATCTTTAATCCATATAATTCATTAACTTACAAAGCGGTCCCTTGTACCTCTGAACTTTGCCATTCTATGCCTGAAACTTCTTGCAATGCTACTACAAATACTTGCCACTATTCAGTCTCGTACGTAGACAAGTCCGTTAGTCATGGAGATCTTGCTACTGACATAGTTGCATTTGATCCCCCCGTTAGTACTTTCCCTCGTATCTTTTTTGGGTGTGCGAATGGCGATGCAAGATCCGGCGTAGTTGGCCTTGGTGGCGGGCCAGGTTCACTTATTTCACAAATGAGTCCTTTTATTGGTGTTTCCACTCCCCTAGTTCCTAACTACCCAAGCACGTTCTATTACATAACACTCACAGATATCTTTGTCGGAAGCGAGAGGATAATCATCCCGGAACCACCAGGGTCCGCGGGACTTCCCAAAGAGGGAAACACGATTATCGACACAGGGACGACATTGACTAATCTTCCATTAGATATTTACAATCAATTTGAAGCCGCGATTAAAAAAGAGGTGAAATTGTCACCTGTGGATGACCCACAAGGTTTTAAGAGAGAAGATTTGAGACTGACTCCACCGAATACATTTGTTCAGACCAGTGATACTACTATGTGTTTGGCTTTTTCGCCTACTGAAAATGACAAACCTGCTGTTTTGGGAAATTTTGCACAGAAGAATCTATTTGTTAGCTATGACCTAGAGAAGAAGACGGTGTCGTTTAGGCATACAGATTGTGAAAAAGAATGA

Network for GWHGAAZE031609

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0252

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14543.7	TAXi_N	1	136	1.10E-37
PF14541.7	TAXi_C	153	217	6.50E-09
PF14541.7	TAXi_C	226	281	6.10E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0004190	molecular_function	aspartic-type endopeptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.008
	SRR3591706	second leaf	0.716
	SRR3591707	mature leaf	0.046
	SRR3591708	Shoot apex	0.412
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.140
	SRR3591711	White flower	0.105
	SRR3591712	Green floral bud	0.105
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.132
	SRR8316896	Juvenile bud stage	0.086
	SRR8316897	Juvenile bud stage	0.052
	SRR8316894	Third green stage	0.102
	SRR8316900	Third green stage	0.111
	SRR8316901	Third green stage	0.169
	SRR8316898	Complete white stage	0.016
	SRR8316899	Complete white stage	0.152
	SRR8316903	Complete white stage	0.097
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.003
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.150
	SRR6706287	Light intensity 50%	0.145
	SRR6706288	Light intensity 20%	0.049
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.076
	CNS0095593	Slightly white alabastrum(diploid) 2	0.070
	CNS0095594	Slightly white alabastrum(diploid) 3	0.073
	CNS0095595	Whole white alabastrum(diploid) 2	0.121
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.065
	CNS0095598	Silvery flower (diploied) 1	0.030
	CNS0095599	Silvery flower (diploied) 2	0.039
	CNS0095600	Silvery flower (diploied) 3	0.063
	CNS0095601	Golden flower (diploid) 1	0.024
	CNS0095602	Golden flower (diploid) 2	0.103
	CNS0095603	Golden flower (diploid) 3	0.062
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.036
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.589
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.018
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.088
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.009
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.547
	CRR073298	Stem 2	0.359
	CRR073299	Stem 3	0.476
	CRR073300	Leaf 1	0.465
	CRR073301	Leaf 2	0.641
	CRR073302	Leaf 3	0.351
	CRR073303	Juvenile bud 1	0.073
	CRR073304	Juvenile bud 2	0.160
	CRR073305	Juvenile bud 3	0.144
	CRR073306	Third green 1	0.046
	CRR073307	Third green 2	0.025
	CRR073308	Third green 3	0.114
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.122