Gene detail

Detail information of GWHGAAZE031619

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011093406.1	3.5295E-145	PREDICTED: 50S ribosomal protein L3, chloroplastic-like [Sesamum indicum]
COG	YP_007142696.1	6E-78	50S ribosomal protein L3
Swissprot	tr\|O80360\|RK3_TOBAC	2E-133	50S ribosomal protein L3, chloroplastic (Precursor; Fragment)
trEMBL	tr\|A0A0A0K9U5\|A0A0A0K9U5_CUCSA	4E-144	Uncharacterized protein {ECO:0000313\|EMBL:KGN46258.1}
TAIR10	AT2G43030.1	5E-103	Ribosomal protein L3 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	61780769	61784047	-
GWHAAZE00000009	mRNA	61780769	61784047	-
GWHAAZE00000009	exon	61780769	61781058	-
GWHAAZE00000009	exon	61782684	61782936	-
GWHAAZE00000009	exon	61783709	61784047	-
GWHAAZE00000009	CDS	61783709	61784047	-
GWHAAZE00000009	CDS	61782684	61782936	-
GWHAAZE00000009	CDS	61780769	61781058	-

Transcript Sequence
>GWHTAAZE031655 ATGGCGGTCGCTCAAATTCCATCCATCAAAATACAATTCTACACTTCTTCATCATCACGTTCTCACTCATGCCGGACACTCCTCCGTTCACACAACCCCAACTATGCCTCACTCCATTGCTCAAATTCCTCATTCCTACACCCTCTCAGTCTCCGCACCTCCAAATCCCCCAATAAAGCCCTAACTCACCGCTCCCCTGGATTACAAATCTGTATGAGCATGGAGGCCGGTATCGGCGTCATGGGTACTAAATTGGGCATGATGAGCTACTTCGAGCCTAGCGGCACCGTTGTCCCGGTCACGGTTGTAGGTTTCCGTGAAGGGAATATTGTTACTCAGGTCAAGACCGAGGCGACAGATGGGTATGACGCCGTTCAGGTCGGGTACCGGAGGGTTCGGGACCGGAAATTGAAGAAGCCAGAGATGGGCCATCTTGAAAAATCAGGCATTATTCCGCTCCGGCACCTTCAGGAGTTTCGGTTACAGTCTGTGGAAGGTTTTGAGCCAAATCAGCGGCTTGTGTTAGAGGAGCTGTTCAATGAAGGGGATTTGGTTGATGTTTCTGGAACCACCATTGGAAAAGGGTTTCAAGGTGGAATTAAGAGGCACCACTTCAAGAGAGGCCCGATGACCCATGGATCTAAGAGTCATAGAGCTCTTGGTTCCATTGGAGCCGGAACCACCCCTGGTCGAGTGTACAAAGGGAAAAAAATGCCGGGGAGAATGGGAGGTACTAAACAAAAGATAAGAAAACTGAGGATTGTGAAGATCGATAATGATCTGAAAATTGTGATGATCAAAGGGGCTCTTCCTGGTAAACCTGGCAATCTTCTACGCATTACTCCGGCTAAGATTGTAGGCAAAAATATCCCCAAGAGCTAG

Network for GWHGAAZE031619

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00297.23	Ribosomal_L3	173	259	1.30E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02906	RP-L3, MRPL3, rplC	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	102.304
	SRR3591706	second leaf	181.258
	SRR3591707	mature leaf	96.828
	SRR3591708	Shoot apex	213.256
	SRR3591709	Stem	37.628
	SRR3591710	White floral bud	17.913
	SRR3591711	White flower	25.558
	SRR3591712	Green floral bud	48.050
	SRR3591713	Yellow flower	12.556
SRP173429	SRR8316895	Juvenile bud stage	54.427
	SRR8316896	Juvenile bud stage	52.644
	SRR8316897	Juvenile bud stage	34.375
	SRR8316894	Third green stage	20.579
	SRR8316900	Third green stage	74.057
	SRR8316901	Third green stage	62.947
	SRR8316898	Complete white stage	10.018
	SRR8316899	Complete white stage	41.943
	SRR8316903	Complete white stage	15.191
	SRR8316902	Silver flowering stage	6.796
	SRR8316904	Silver flowering stage	8.341
	SRR8316905	Silver flowering stage	3.312
	SRR8316906	Gold flowering stage	17.182
	SRR8316907	Gold flowering stage	18.019
	SRR8316908	Gold flowering stage	17.389
SRP132670	SRR6706286	Control	58.883
	SRR6706287	Light intensity 50%	53.296
	SRR6706288	Light intensity 20%	61.136
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	37.975
	CNS0095593	Slightly white alabastrum(diploid) 2	40.255
	CNS0095594	Slightly white alabastrum(diploid) 3	29.146
	CNS0095595	Whole white alabastrum(diploid) 2	29.024
	CNS0095596	Whole white alabastrum(diploid) 3	30.785
	CNS0095597	Whole white alabastrum(diploid) 4	25.332
	CNS0095598	Silvery flower (diploied) 1	66.478
	CNS0095599	Silvery flower (diploied) 2	57.278
	CNS0095600	Silvery flower (diploied) 3	26.902
	CNS0095601	Golden flower (diploid) 1	43.558
	CNS0095602	Golden flower (diploid) 2	32.409
	CNS0095603	Golden flower (diploid) 3	30.484
	CNS0095604	Slightly white alabastrum(tetraploid) 1	33.298
	CNS0095605	Slightly white alabastrum(tetraploid) 2	34.877
	CNS0095606	Slightly white alabastrum(tetraploid) 3	47.873
	CNS0095607	Whole white alabastrum(tetraploid) 1	21.033
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.783
	CNS0095609	Whole white alabastrum(tetraploid) 3	46.738
	CNS0095610	Silvery flower (tetraploid) 1	19.784
	CNS0095611	Silvery flower (tetraploid) 2	30.568
	CNS0095612	Silvery flower (tetraploid) 3	33.373
	CNS0095613	Golden flower (tetraploid) 1	11.226
	CNS0095614	Golden flower (tetraploid) 2	16.661
	CNS0095615	Golden flower (tetraploid) 3	5.483
CRA001975	CRR073297	Stem 1	114.202
	CRR073298	Stem 2	108.538
	CRR073299	Stem 3	158.232
	CRR073300	Leaf 1	62.966
	CRR073301	Leaf 2	70.663
	CRR073302	Leaf 3	75.298
	CRR073303	Juvenile bud 1	77.337
	CRR073304	Juvenile bud 2	61.782
	CRR073305	Juvenile bud 3	60.667
	CRR073306	Third green 1	14.582
	CRR073307	Third green 2	8.519
	CRR073308	Third green 3	10.120
	CRR073309	Second white 1	32.996
	CRR073310	Second white 2	20.261
	CRR073311	Second white 3	12.314
	CRR073312	Silver flowering 1	13.393
	CRR073313	Silver flowering 2	19.926
	CRR073314	Silver flowering 3	12.394
	CRR073315	Gold flowering 1	275.204
	CRR073316	Gold flowering 2	293.175
	CRR073317	Gold flowering 3	301.461
	CRR073318	Tawny withering 1	53.931
	CRR073319	Tawny withering 2	52.578
	CRR073320	Tawny withering 3	52.255