Gene detail

Detail information of GWHGAAZE031623

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011086777.1	0	PREDICTED: beta-hexosaminidase 2 [Sesamum indicum]
COG	YP_592568.1	1E-44	beta-N-acetylhexosaminidase
Swissprot	tr\|Q9SYK0\|HEXO2_ARATH	0	Beta-hexosaminidase 2 (Precursor)
trEMBL	tr\|F6GZ26\|F6GZ26_VITVI	0	Beta-hexosaminidase {ECO:0000256\|PIRNR:PIRNR001093}
TAIR10	AT1G05590.1	0	beta-hexosaminidase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	61855648	61861317	-
GWHAAZE00000009	mRNA	61855648	61861317	-
GWHAAZE00000009	exon	61855648	61856180	-
GWHAAZE00000009	exon	61856255	61856590	-
GWHAAZE00000009	exon	61858047	61858116	-
GWHAAZE00000009	exon	61860532	61861317	-
GWHAAZE00000009	CDS	61860532	61861317	-
GWHAAZE00000009	CDS	61858047	61858116	-
GWHAAZE00000009	CDS	61856255	61856590	-
GWHAAZE00000009	CDS	61855648	61856180	-

Transcript Sequence
>GWHTAAZE031659 ATGGCTACTTATCTCTCTTTCTCTTTCTCTCTCCTCATTCTCTCTACACTTTCTCCCCAAATCTCAGCCCTTGGATCATCATCCATCAACGTATGGCCCAAACCTAGAACCTTCTCATGGACCACCCCACATGCGATCCCTCTCTCCCCACTCTTCACCATTACCTCCCCTCCCCACCAATACCTAACCCCGGCCGCCTCTCGCTACCTCCGCCAGATCCTCACCGAAAACCACCGCCCCCTCGTCAACCCCGCCGTCAATGTCACGGCGGCGCCGCCACTCCAAACCCTAGCCATCACCGTATCCGACCTCTCTGCCGCCCTAACCCACGGCGTCAACGAATCCTACACTCTCTCCATTCCGGCAGCTGGAACCACCGCGTATCTGGTGGCGGAGACGGCTTGGGGGGTCATCAGAGGATTGGAGAGCTTTTCGCAGCTGGTGTGGGGAGATCCGGTGGCGGTGGTGGCTGCCGGAGTTTGGATCTCCGATTGGCCATTGTACGATCACCGGGGAGTGATGCTGGATACTTCGAGGAATTATTTTCCTGTGGAGGATCTGATGAGGTTGATCGGAGCGATGAGCGAGAACAAATTGAATGTATTTCATTGGCATATAACGGACTCGCATTCGTTCCCATTGAGATTACTGTCGGAGCCCGATCTTGCCGGAAAAGGATCGTATGGGGCGGAGATGGAGTATTCGGCGGAGGATGTGAAGAGAGTGGTGGAGTTTGGGATGGAACATGGGGTTAGGGTTATGCCCGAGATTGACATGCCAGGTGAGGTGGCGAAGATAGTGGGGGTGAGAGGGAAGATGCTGGTGGAGATAGGTGAATGGGATAGCGGCGATGGTGCGCATACAGGATCATTTGCTCAAGCATACCCTGAAATTGTCACTTGTGCCAACATGTTCTGGTGGCCTCCAGGGGCGGATCGGCTAGCCGCCGAGCCAGGAACTGGCCAACTCAACCCCTTAAACCCTAAAACCTATGAGGTCCTTAAAAACATCATTAACGACGTCACTGCCATGTTCCCGGAACAATTCTACCACGCCGGAGCCGACGAGGTGGTCCCCGGTTGTTGGAAAGCAGACCCCACCATCCAAGCCTTCCTCGCCAACAATGGTACCCTCAGTCAGCTCCTCGAGACCTTTATCAACTCCACATACCCTTACATTTCATCGCTAAACCAATACAATTTACAGACATGGAATAATGGACCCAACAACACTAAACGGATCGTGACCGCCGGGTACCGGGCCATAGTCTCGTCTGCGGACTACTACTACTTGGATTGTGGTCATGGGGATTTTGTTGGGAACAATAGCGAGTATAACGAACCGCCTGGTACCGACCAAGGTAATGGTGGGTCGTGGTGTGGGCCCTTCAAGACGTGGCAAATGATATATAACTATGATATAACGTATGGGTTGACTGATGTGGAGGCCGAGTTGGTGTTGGGAGGTGAGTTGGCACTTTGGTCCGAGCAAGCCGATCCAACAGTCCTTGACCCACGGATCTGGCCGAGGGCTTCGGCATTTGCAGAAGCAATGTGGTCCGGGAACCGAGACGAGACAGGCTCCAAACGGTTCGCGGAGGCAACCGACCGGTTGAACGAGTGGAGGTATAGGATGGTGAAGAGGGGCGTAAATGCTGAGCCAATACAGCCACTTTGGTGTGTTAGGAACCCGGGCATGTGTAACACGGTTCAAGGGCTGGTTTAG

Network for GWHGAAZE031623

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14845.7	Glycohydro_20b2	31	147	2.70E-19
PF00728.23	Glyco_hydro_20	168	405	7.40E-55

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12373	HEXA_B	Metabolic pathways	map01100
		Amino sugar and nucleotide sugar metabolism	map00520
		Various types of N-glycan biosynthesis	map00513
		Glycosaminoglycan degradation	map00531
		Glycosphingolipid biosynthesis - globo and isoglobo series	map00603
		Glycosphingolipid biosynthesis - ganglio series	map00604
		Other glycan degradation	map00511
		Lysosome	map04142

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004563	molecular_function	beta-N-acetylhexosaminidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.660
	SRR3591706	second leaf	17.262
	SRR3591707	mature leaf	31.673
	SRR3591708	Shoot apex	15.286
	SRR3591709	Stem	5.746
	SRR3591710	White floral bud	19.548
	SRR3591711	White flower	10.755
	SRR3591712	Green floral bud	11.412
	SRR3591713	Yellow flower	8.699
SRP173429	SRR8316895	Juvenile bud stage	5.646
	SRR8316896	Juvenile bud stage	8.340
	SRR8316897	Juvenile bud stage	4.854
	SRR8316894	Third green stage	3.120
	SRR8316900	Third green stage	9.252
	SRR8316901	Third green stage	9.470
	SRR8316898	Complete white stage	4.038
	SRR8316899	Complete white stage	7.122
	SRR8316903	Complete white stage	7.469
	SRR8316902	Silver flowering stage	4.846
	SRR8316904	Silver flowering stage	6.845
	SRR8316905	Silver flowering stage	4.289
	SRR8316906	Gold flowering stage	5.655
	SRR8316907	Gold flowering stage	9.776
	SRR8316908	Gold flowering stage	12.455
SRP132670	SRR6706286	Control	16.028
	SRR6706287	Light intensity 50%	15.618
	SRR6706288	Light intensity 20%	15.588
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.266
	CNS0095593	Slightly white alabastrum(diploid) 2	8.480
	CNS0095594	Slightly white alabastrum(diploid) 3	8.226
	CNS0095595	Whole white alabastrum(diploid) 2	6.805
	CNS0095596	Whole white alabastrum(diploid) 3	7.779
	CNS0095597	Whole white alabastrum(diploid) 4	6.858
	CNS0095598	Silvery flower (diploied) 1	8.803
	CNS0095599	Silvery flower (diploied) 2	6.707
	CNS0095600	Silvery flower (diploied) 3	9.563
	CNS0095601	Golden flower (diploid) 1	4.041
	CNS0095602	Golden flower (diploid) 2	6.811
	CNS0095603	Golden flower (diploid) 3	5.300
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.164
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.473
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.053
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.019
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.123
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.466
	CNS0095610	Silvery flower (tetraploid) 1	13.636
	CNS0095611	Silvery flower (tetraploid) 2	9.179
	CNS0095612	Silvery flower (tetraploid) 3	8.353
	CNS0095613	Golden flower (tetraploid) 1	6.568
	CNS0095614	Golden flower (tetraploid) 2	9.025
	CNS0095615	Golden flower (tetraploid) 3	2.875
CRA001975	CRR073297	Stem 1	11.523
	CRR073298	Stem 2	11.828
	CRR073299	Stem 3	11.637
	CRR073300	Leaf 1	13.379
	CRR073301	Leaf 2	12.329
	CRR073302	Leaf 3	11.848
	CRR073303	Juvenile bud 1	13.104
	CRR073304	Juvenile bud 2	11.035
	CRR073305	Juvenile bud 3	11.490
	CRR073306	Third green 1	21.033
	CRR073307	Third green 2	17.346
	CRR073308	Third green 3	15.149
	CRR073309	Second white 1	6.730
	CRR073310	Second white 2	3.754
	CRR073311	Second white 3	3.255
	CRR073312	Silver flowering 1	21.013
	CRR073313	Silver flowering 2	54.069
	CRR073314	Silver flowering 3	56.713
	CRR073315	Gold flowering 1	17.110
	CRR073316	Gold flowering 2	28.555
	CRR073317	Gold flowering 3	16.473
	CRR073318	Tawny withering 1	9.112
	CRR073319	Tawny withering 2	10.483
	CRR073320	Tawny withering 3	5.659