Detail information of GWHGAAZE031629


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDX67746.19.17515E-27BnaA07g17860D [Brassica napus]
Swissprottr|Q06009|PP2A_MEDSA2E-28Serine/threonine-protein phosphatase PP2A catalytic subunit
trEMBLtr|A0A078BSQ4|A0A078BSQ4_BRANA3E-27BnaA07g17860D protein {ECO:0000313|EMBL:CDX67746.1}
TAIR10AT2G42500.12E-24protein phosphatase 2A-3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene6194933861953168-
GWHAAZE00000009mRNA6194933861953168-
GWHAAZE00000009exon6194933861949466-
GWHAAZE00000009exon6195061161950673-
GWHAAZE00000009exon6195076361950866-
GWHAAZE00000009exon6195266461952704-
GWHAAZE00000009exon6195315561953168-
GWHAAZE00000009CDS6195315561953168-
GWHAAZE00000009CDS6195266461952704-
GWHAAZE00000009CDS6195076361950866-
GWHAAZE00000009CDS6195061161950673-
GWHAAZE00000009CDS6194933861949466-
Transcript Sequence

Network for GWHGAAZE031629

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0154


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K04382PPP2C mRNA surveillance pathway map03015
MAPK signaling pathway - flymap04013
TGF-beta signaling pathwaymap04350
Hippo signaling pathwaymap04390
Hippo signaling pathway - flymap04391
Sphingolipid signaling pathwaymap04071
PI3K-Akt signaling pathwaymap04151
AMPK signaling pathwaymap04152
Autophagy - animalmap04140
Autophagy - yeastmap04138
Autophagy - othermap04136
Cell cycle - yeastmap04111
Meiosis - yeastmap04113
Oocyte meiosismap04114
Tight junctionmap04530
Adrenergic signaling in cardiomyocytesmap04261
Dopaminergic synapsemap04728
Long-term depressionmap04730

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.749
SRR3591706second leaf0.900
SRR3591707mature leaf1.006
SRR3591708Shoot apex0.681
SRR3591709Stem0.836
SRR3591710White floral bud0.837
SRR3591711White flower0.695
SRR3591712Green floral bud0.787
SRR3591713Yellow flower0.254
SRP173429 SRR8316895Juvenile bud stage 8.816
SRR8316896Juvenile bud stage 18.399
SRR8316897Juvenile bud stage 4.306
SRR8316894Third green stage 7.169
SRR8316900Third green stage 15.406
SRR8316901Third green stage 16.842
SRR8316898Complete white stage 6.658
SRR8316899Complete white stage 20.899
SRR8316903Complete white stage 14.822
SRR8316902Silver flowering stage9.804
SRR8316904Silver flowering stage11.869
SRR8316905Silver flowering stage4.692
SRR8316906Gold flowering stage 12.817
SRR8316907Gold flowering stage 16.110
SRR8316908Gold flowering stage 13.240
SRP132670SRR6706286Control6.650
SRR6706287Light intensity 50%9.149
SRR6706288Light intensity 20%10.146
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.060
CNS0095593Slightly white alabastrum(diploid) 29.939
CNS0095594Slightly white alabastrum(diploid) 312.309
CNS0095595Whole white alabastrum(diploid) 215.059
CNS0095596Whole white alabastrum(diploid) 311.206
CNS0095597Whole white alabastrum(diploid) 413.386
CNS0095598Silvery flower (diploied) 117.752
CNS0095599Silvery flower (diploied) 28.438
CNS0095600Silvery flower (diploied) 313.221
CNS0095601Golden flower (diploid) 111.386
CNS0095602Golden flower (diploid) 28.306
CNS0095603Golden flower (diploid) 37.314
CNS0095604Slightly white alabastrum(tetraploid) 113.400
CNS0095605Slightly white alabastrum(tetraploid) 28.728
CNS0095606Slightly white alabastrum(tetraploid) 316.884
CNS0095607Whole white alabastrum(tetraploid) 112.886
CNS0095608Whole white alabastrum(tetraploid) 29.042
CNS0095609Whole white alabastrum(tetraploid) 310.638
CNS0095610Silvery flower (tetraploid) 112.172
CNS0095611Silvery flower (tetraploid) 27.944
CNS0095612Silvery flower (tetraploid) 314.051
CNS0095613Golden flower (tetraploid) 16.223
CNS0095614Golden flower (tetraploid) 210.900
CNS0095615Golden flower (tetraploid) 37.090
CRA001975CRR073297Stem 110.462
CRR073298Stem 28.005
CRR073299Stem 31.913
CRR073300Leaf 19.719
CRR073301Leaf 211.794
CRR073302Leaf 31.552
CRR073303Juvenile bud 13.928
CRR073304Juvenile bud 20.434
CRR073305Juvenile bud 32.914
CRR073306Third green 10.711
CRR073307Third green 21.283
CRR073308Third green 31.266
CRR073309Second white 10.310
CRR073310Second white 20.749
CRR073311Second white 30.570
CRR073312Silver flowering 10.127
CRR073313Silver flowering 20.407
CRR073314Silver flowering 30.008
CRR073315Gold flowering 13.107
CRR073316Gold flowering 21.931
CRR073317Gold flowering 30.111
CRR073318Tawny withering 13.617
CRR073319Tawny withering 23.545
CRR073320Tawny withering 34.979