Detail information of GWHGAAZE031631


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP07663.14.72853E-73unnamed protein product [Coffea canephora]
Swissprottr|O64864|YLS3_ARATH3E-62Protein YLS3 (Precursor)
trEMBLtr|A0A068UJ70|A0A068UJ70_COFCA2E-73Coffea canephora DH200=94 genomic scaffold, scaffold_27 {ECO:0000313|EMBL:CDP07663.1}
TAIR10AT2G44300.15E-48Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene6196452261974430-
GWHAAZE00000009mRNA6196452261974430-
GWHAAZE00000009exon6197406161974430-
GWHAAZE00000009exon6197346761973571-
GWHAAZE00000009exon6196452261964652-
GWHAAZE00000009CDS6197406161974430-
GWHAAZE00000009CDS6197346761973571-
GWHAAZE00000009CDS6196452261964652-
Transcript Sequence

Network for GWHGAAZE031631

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF14368.7LTP_2361221.50E-13
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf65.782
SRR3591706second leaf16.487
SRR3591707mature leaf2.065
SRR3591708Shoot apex21.868
SRR3591709Stem106.609
SRR3591710White floral bud20.926
SRR3591711White flower9.578
SRR3591712Green floral bud15.309
SRR3591713Yellow flower3.475
SRP173429 SRR8316895Juvenile bud stage 4.743
SRR8316896Juvenile bud stage 5.202
SRR8316897Juvenile bud stage 2.749
SRR8316894Third green stage 2.265
SRR8316900Third green stage 9.274
SRR8316901Third green stage 8.950
SRR8316898Complete white stage 3.154
SRR8316899Complete white stage 20.100
SRR8316903Complete white stage 6.115
SRR8316902Silver flowering stage1.973
SRR8316904Silver flowering stage2.376
SRR8316905Silver flowering stage0.330
SRR8316906Gold flowering stage 1.233
SRR8316907Gold flowering stage 2.437
SRR8316908Gold flowering stage 8.769
SRP132670SRR6706286Control5.997
SRR6706287Light intensity 50%7.373
SRR6706288Light intensity 20%5.235
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.557
CNS0095593Slightly white alabastrum(diploid) 28.616
CNS0095594Slightly white alabastrum(diploid) 34.951
CNS0095595Whole white alabastrum(diploid) 26.096
CNS0095596Whole white alabastrum(diploid) 34.153
CNS0095597Whole white alabastrum(diploid) 43.164
CNS0095598Silvery flower (diploied) 12.269
CNS0095599Silvery flower (diploied) 22.790
CNS0095600Silvery flower (diploied) 31.900
CNS0095601Golden flower (diploid) 11.064
CNS0095602Golden flower (diploid) 22.129
CNS0095603Golden flower (diploid) 31.114
CNS0095604Slightly white alabastrum(tetraploid) 110.641
CNS0095605Slightly white alabastrum(tetraploid) 24.635
CNS0095606Slightly white alabastrum(tetraploid) 326.349
CNS0095607Whole white alabastrum(tetraploid) 12.602
CNS0095608Whole white alabastrum(tetraploid) 21.629
CNS0095609Whole white alabastrum(tetraploid) 39.708
CNS0095610Silvery flower (tetraploid) 117.957
CNS0095611Silvery flower (tetraploid) 22.798
CNS0095612Silvery flower (tetraploid) 33.403
CNS0095613Golden flower (tetraploid) 10.936
CNS0095614Golden flower (tetraploid) 24.139
CNS0095615Golden flower (tetraploid) 31.151
CRA001975CRR073297Stem 110.032
CRR073298Stem 212.402
CRR073299Stem 323.169
CRR073300Leaf 112.097
CRR073301Leaf 212.884
CRR073302Leaf 324.425
CRR073303Juvenile bud 117.704
CRR073304Juvenile bud 212.130
CRR073305Juvenile bud 322.349
CRR073306Third green 11.029
CRR073307Third green 23.201
CRR073308Third green 33.667
CRR073309Second white 10.000
CRR073310Second white 20.212
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.207
CRR073314Silver flowering 30.000
CRR073315Gold flowering 13.120
CRR073316Gold flowering 25.592
CRR073317Gold flowering 34.410
CRR073318Tawny withering 132.063
CRR073319Tawny withering 230.750
CRR073320Tawny withering 335.268