Gene detail

Detail information of GWHGAAZE031637

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AFI08590.1	0	citrate synthase [Rhododendron micranthum]
COG	YP_004990689.1	4E-167	citrate (Si)-synthase
Swissprot	tr\|O80433\|CISY_DAUCA	0	Citrate synthase, mitochondrial (Precursor)
trEMBL	tr\|I1U4L2\|I1U4L2_9ERIC	0	Citrate synthase {ECO:0000256\|RuleBase:RU000441}
TAIR10	AT2G44350.2	0	Citrate synthase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	62084864	62094618	+
GWHAAZE00000009	mRNA	62084864	62094618	+
GWHAAZE00000009	exon	62084864	62084944	+
GWHAAZE00000009	exon	62085076	62085141	+
GWHAAZE00000009	exon	62085818	62085881	+
GWHAAZE00000009	exon	62086328	62086410	+
GWHAAZE00000009	exon	62086935	62086984	+
GWHAAZE00000009	exon	62087064	62087141	+
GWHAAZE00000009	exon	62088426	62088554	+
GWHAAZE00000009	exon	62088723	62088765	+
GWHAAZE00000009	exon	62089335	62089421	+
GWHAAZE00000009	exon	62092596	62092697	+
GWHAAZE00000009	exon	62093000	62093107	+
GWHAAZE00000009	exon	62093223	62093273	+
GWHAAZE00000009	exon	62093830	62093903	+
GWHAAZE00000009	exon	62094011	62094062	+
GWHAAZE00000009	exon	62094526	62094618	+
GWHAAZE00000009	CDS	62084864	62084944	+
GWHAAZE00000009	CDS	62085076	62085141	+
GWHAAZE00000009	CDS	62085818	62085881	+
GWHAAZE00000009	CDS	62086328	62086410	+
GWHAAZE00000009	CDS	62086935	62086984	+
GWHAAZE00000009	CDS	62087064	62087141	+
GWHAAZE00000009	CDS	62088426	62088554	+
GWHAAZE00000009	CDS	62088723	62088765	+
GWHAAZE00000009	CDS	62089335	62089421	+
GWHAAZE00000009	CDS	62092596	62092697	+
GWHAAZE00000009	CDS	62093000	62093107	+
GWHAAZE00000009	CDS	62093223	62093273	+
GWHAAZE00000009	CDS	62093830	62093903	+
GWHAAZE00000009	CDS	62094011	62094062	+
GWHAAZE00000009	CDS	62094526	62094618	+

Transcript Sequence
>GWHTAAZE031675 ATGGTTTTTCTACAGGAGCGCCTTAAAAAAGTAAAATCAGAATACGGAAAAGTTCAGCTGGGAAACATTACTGTTGACATGGTACTTGGTGGGATGAGAGGAATGACTGGGTTACTATGGGAAACTTCATTACTTGACCCAGATGAGGTACCAAGTAAAGAGCAAGTAGATGCATTATCAAAAGAATTGCGAAGTCGTGCAGCTGTCCCAGATCATGTATATAAAACCATTGACGCTTTACCGGTTACAGCTCATCCAATGACTCAGTTTGCAACTGGTGTTATGGCTCTTCAGGTTCAAAGTGAATTTCAGAAGGCATATGAGAAGGGGATTCACAAATCAAAGTACTGGGAACCAACATTTGAGGACTCTCTTTCTTTGATTGCTCAAGTACCAGCTGTAGCTGCTTATGTCTACCGCAGGATTTACAAGAATGGAGAAATGATACCCAAGGATGACTCCTTAGATTATGGTGGAAATTTTGCACACATGCTTGGTTTTGATAGTCCCAGCATGCAAGAGCTTATGAGGATGTACATCACCATCCATAGTGATCATGAAGGTGGAAATGTTAGTGCTCACACCGGTCATCTAGTTGCAAGTGCCCTTTCAGATCCTTACCTTTCGTTTGCTGCTGCATTAAACGGATTAGCTGGACCTCTCCATGGCCTGGCCAATCAGGAAGTTTTGCTATGGATCAAATCTGTGGTAGATGAGTGTGGAGAGAATATAAACAAAGAGCAATTAAAAGACTATGTCTGGAAAACCTTGAACAGTGGCAAGGTTGTTCCGGGTTTTGGACATGGAGTTCTGCGAAAAACAGATCCAAGATACATGTGCCAGAGGGAGTTTGCATTGAAGCACTTGCCTGATGACCCACTTTTCCAGCTGGTTTCAAAGCTTTATGAGGTGGTACCTCCAATTCTGACAGAGCTTGGCAAGGTGAAAAACCCATGGCCCAATGTTGATGCCCACAGCGGTGTATTGCTGAATTATTATGGCTTAACTGAAGCAAGATACTTTACCGTCCTCTTCGGCGTATCAAGGTCTATCGGGATTTGCTCTCAGCTGATTTGGGACCGAGCTCTCGGGTTGCCGCTTGAGAGGCCAAAAAGTGTTACAATGGAATGGCTTGAAAAGTACTGCAAGAAATCTTCTTAA

Network for GWHGAAZE031637

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00285.22	Citrate_synt	44	371	1.20E-94

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01647	CS, gltA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		2-Oxocarboxylic acid metabolism	map01210
		Biosynthesis of amino acids	map01230
		Citrate cycle	map00020
		Glyoxylate and dicarboxylate metabolism	map00630

Gene Ontology

GO term	Ontology	Name
GO:0006101	biological_process	citrate metabolic process
GO:0006099	biological_process	tricarboxylic acid cycle
GO:0046912	molecular_function	transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer
GO:0004108	molecular_function	citrate (Si)-synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	91.473
	SRR3591706	second leaf	43.470
	SRR3591707	mature leaf	26.581
	SRR3591708	Shoot apex	58.196
	SRR3591709	Stem	57.531
	SRR3591710	White floral bud	132.602
	SRR3591711	White flower	172.900
	SRR3591712	Green floral bud	165.292
	SRR3591713	Yellow flower	202.789
SRP173429	SRR8316895	Juvenile bud stage	66.534
	SRR8316896	Juvenile bud stage	126.768
	SRR8316897	Juvenile bud stage	63.572
	SRR8316894	Third green stage	51.849
	SRR8316900	Third green stage	196.946
	SRR8316901	Third green stage	182.931
	SRR8316898	Complete white stage	70.577
	SRR8316899	Complete white stage	118.873
	SRR8316903	Complete white stage	100.291
	SRR8316902	Silver flowering stage	89.993
	SRR8316904	Silver flowering stage	112.480
	SRR8316905	Silver flowering stage	48.107
	SRR8316906	Gold flowering stage	190.787
	SRR8316907	Gold flowering stage	199.713
	SRR8316908	Gold flowering stage	254.576
SRP132670	SRR6706286	Control	97.162
	SRR6706287	Light intensity 50%	103.691
	SRR6706288	Light intensity 20%	106.633
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	102.259
	CNS0095593	Slightly white alabastrum(diploid) 2	105.265
	CNS0095594	Slightly white alabastrum(diploid) 3	99.098
	CNS0095595	Whole white alabastrum(diploid) 2	104.215
	CNS0095596	Whole white alabastrum(diploid) 3	125.368
	CNS0095597	Whole white alabastrum(diploid) 4	97.960
	CNS0095598	Silvery flower (diploied) 1	63.664
	CNS0095599	Silvery flower (diploied) 2	60.036
	CNS0095600	Silvery flower (diploied) 3	129.017
	CNS0095601	Golden flower (diploid) 1	52.513
	CNS0095602	Golden flower (diploid) 2	105.609
	CNS0095603	Golden flower (diploid) 3	104.534
	CNS0095604	Slightly white alabastrum(tetraploid) 1	141.347
	CNS0095605	Slightly white alabastrum(tetraploid) 2	121.691
	CNS0095606	Slightly white alabastrum(tetraploid) 3	119.091
	CNS0095607	Whole white alabastrum(tetraploid) 1	147.545
	CNS0095608	Whole white alabastrum(tetraploid) 2	169.726
	CNS0095609	Whole white alabastrum(tetraploid) 3	202.553
	CNS0095610	Silvery flower (tetraploid) 1	161.167
	CNS0095611	Silvery flower (tetraploid) 2	117.181
	CNS0095612	Silvery flower (tetraploid) 3	160.518
	CNS0095613	Golden flower (tetraploid) 1	103.091
	CNS0095614	Golden flower (tetraploid) 2	138.479
	CNS0095615	Golden flower (tetraploid) 3	89.099
CRA001975	CRR073297	Stem 1	87.673
	CRR073298	Stem 2	82.962
	CRR073299	Stem 3	86.224
	CRR073300	Leaf 1	114.088
	CRR073301	Leaf 2	114.317
	CRR073302	Leaf 3	107.215
	CRR073303	Juvenile bud 1	139.616
	CRR073304	Juvenile bud 2	112.045
	CRR073305	Juvenile bud 3	112.798
	CRR073306	Third green 1	83.644
	CRR073307	Third green 2	88.179
	CRR073308	Third green 3	85.810
	CRR073309	Second white 1	135.620
	CRR073310	Second white 2	113.163
	CRR073311	Second white 3	99.504
	CRR073312	Silver flowering 1	125.043
	CRR073313	Silver flowering 2	126.306
	CRR073314	Silver flowering 3	127.961
	CRR073315	Gold flowering 1	24.445
	CRR073316	Gold flowering 2	37.999
	CRR073317	Gold flowering 3	29.381
	CRR073318	Tawny withering 1	65.305
	CRR073319	Tawny withering 2	69.713
	CRR073320	Tawny withering 3	58.841