Gene detail

Detail information of GWHGAAZE031652

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002263854.1	PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic [Vitis vinifera]
Swissprot	tr\|O24370\|LOX21_SOLTU	Linoleate 13S-lipoxygenase 2-1, chloroplastic (Precursor)
trEMBL	tr\|F6HB91\|F6HB91_VITVI	Lipoxygenase {ECO:0000256\|RuleBase:RU003975}
TAIR10	AT3G45140.1	lipoxygenase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	62686723	62694832	+
GWHAAZE00000009	mRNA	62686723	62694832	+
GWHAAZE00000009	exon	62686723	62687071	+
GWHAAZE00000009	exon	62689290	62689558	+
GWHAAZE00000009	exon	62689707	62689881	+
GWHAAZE00000009	exon	62690796	62690993	+
GWHAAZE00000009	exon	62691617	62691702	+
GWHAAZE00000009	exon	62692045	62692155	+
GWHAAZE00000009	exon	62692527	62692828	+
GWHAAZE00000009	exon	62693104	62693370	+
GWHAAZE00000009	exon	62694073	62694832	+
GWHAAZE00000009	CDS	62686723	62687071	+
GWHAAZE00000009	CDS	62689290	62689558	+
GWHAAZE00000009	CDS	62689707	62689881	+
GWHAAZE00000009	CDS	62690796	62690993	+
GWHAAZE00000009	CDS	62691617	62691702	+
GWHAAZE00000009	CDS	62692045	62692155	+
GWHAAZE00000009	CDS	62692527	62692828	+
GWHAAZE00000009	CDS	62693104	62693370	+
GWHAAZE00000009	CDS	62694073	62694832	+

Transcript Sequence
>GWHTAAZE031690 ATGATGATAAATAAACCGCTCCACAAACACAAACCCACACAAACTTTTCCAATATTTACCAAACATGCCCTTACCGGCCCTGGTAACAATGTACACTTTCCGGTCTGTCAACGGAACCATTTTCACCAGAAACAGCCAAGAGGTGGCTTACGTGCCGCCTCTAGAACCATCAAAGCGCAAGTAACTGCCACGCCGGAAGTGGCCGTGACCGTTAAGGCTGTTGTGACAGTTAAGTTGACAGTTGGAGGGTCACTTACAAACATTGGGGTGTCAAGGGGTCTTGATGACATTGCTGATCTTGTTGGTAAAACACTTGTTTTGGAGCTTGCTAGCACTGACCTTGATTCAAATACTGGAGAAGATAAGGGAACAATTAAGGCTTATGCACATAGATTAAGCCATGACAAGAATGAAGTGAAATATGAGACAAAATTTGTAGTTCCACCGGGCTTTGGAGGAGTGGGGGCAGTTTTGGTAGAAAATGAACACCACAAGGAGATTTATCTTAAGGACATTGTTCTCAATGGCTTCCAAGATGGCCCTGTAAATGTTACATGCAACTCTTGGGTTCACTCCAAGTTTGATGACAAAACCAAAAGAATCTTCTTCACCAACAAGTCGTATTTACCATCTGAGACGCCGGATGGACTAAGGAGGTTTAGAGAGAAGGATCTGGAGATCCTCCGGGGAAATGGTCAAGGGGAGAGAAAAAAATTTGAGAGGATTTATGATTATGATACGTATAATGATCTTGGAAATCCTGATAAGAGTGACATGGCTCGACCTGTGCTGGACCCATTAAGTGAGACGAGAAGCATGGGAGTGTACGTGCCAAGGGACGAGGCATTCTCAGAGTTGAAGGAAGCCACATTCTCAGCCAAGACGCTAAAGTCGGTACTCCACGCGCTGTTACCGACGATTGAGAGCACGCTCCTGGACCCACAGCTAGGGTTTCCGTATTTCACGGCGATAGACACGCTGTTCAATGAAGGAGATAAATTTTCATGGTTTAGAGACGAAGAATTTTCTCGTCAAGCCCTTGCGGGTCTAAACCCTTACAGCATAGAGCTAGTTACGGAGTGGCCCTTGAAGAGCAAATTAGACCCAAAAATATATGGTCCACCCGAATCCAAAATCACCAAAGAACTTGTCGAAGAAGAAATTAGAGGCTTTATGACTTTTGACGAGGCCTTGAAACAAAAGAAGCTGTTTATGCTCGACTACCATGATTTGTATTTGCCATATGTACACAAGGTAAGAGAGCTCAAAAACACCACATTGTATGGATCTCGAACCCTCTTCTTCCTCACCAGCGAAGGCACGTTGAGGCCTATTGCCATCGAGCTCACAAGGCCACCTTCAGCTGACAAGCCGCAGTGGAAGGAAGTGTACACCCCAAAATGGGATGCCACAAGTTGCTGGCTCTGGAGGATGGCTAAGGCTCATGTCTGTGCCCATGACTCCGGTTATCACCAACTCGTCATTCATTGGTTAAGGACTCACTGTTGTACCGAGCCGTACATAATAGCAGCAAATCGGCAACTAAGCGCAATGCATCCGATTTATAGACTTCTCCATCCTCACTTCCGATACACGATGGAAATAAATGCTCTTGCCCGAGAAGACCTAGTCAACGCAGGTGGGGTCATTGAGGGCGCCTTCTTCCCGGGCAAGTACTCCGTTGAGCTCAGCTCAGTTGCTTATGGTCAACTTTGGCGGTTCGACAAGGAAGCTTTGCCAGCTGACTTGATTAGAAGGGGAATGGCAGTCGAGGATCCAACGGCAGAGCACGGCCTGAAGCTAGCGATCGAGGATTACCCTTTTGCCAATGATGGCCTGATTCTCTGGGACACTATCAAGCAATGGATAACTGACTACGTGAGCCACTACTACCCGGACGAAAACCTGGTCAAAACCGATACTGAGCTCCAATCTTGGTGGACTGAGGTTCGAACCAAGGGCCATGAAGACAAAAAGGACGAGCCCTGGTGGCCGGTTCTCAACACCCCTAAAGACCTCATAGAAATACTCACAACCATAATTTGGGTCACTGCCGGTCACCACGCAGCTGTGAATTTTGGACAATATTTGTTCGCCGGCTACTTCCCTAACCGACCCACGATAACAAGAACCAATATGCCAAATGAGGACCCAACTGAAGAAGGGCTAGAAAAGTTCTTAAAAAGGCCCGAGAGTGTATTGCTCGAAAGTTTCCCTTCACAAATTCAAGCAACCAAAGTGATGGCAGTTTTGGATGTTTTATCAAGTCACTCGCCCGATGAGGAGTACCTAGGGAAGGAGCCGGAACCTTCTTGGGCGGAGAATCCGGTCATTAAGGCCGCATTTGAACGGTTTAGTGGAAAATTGATGGAGCTTGAAGGGATTATAGACGCAAGGAATAATAATTTGAATCTCAAGAATAGGGCTGGAGCTGGGGTTGTACCTTATGAGCTTTTGAAGCCGTACTCGGAAGCTGGGGTGACTGGTAAAGGGGTGCCTAATAGCATCTCCATCTGA

Network for GWHGAAZE031652

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0229

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01477.24	PLAT	133	203	2.80E-07
PF00305.20	Lipoxygenase	216	264	8.20E-17
PF00305.20	Lipoxygenase	265	331	4.30E-12
PF00305.20	Lipoxygenase	331	821	6.00E-256

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00454	LOX2S	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Linoleic acid metabolism	map00591
		alpha-Linolenic acid metabolism	map00592

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005515	molecular_function	protein binding
GO:0016702	molecular_function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872	molecular_function	metal ion binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	59.282
	SRR3591706	second leaf	10.348
	SRR3591707	mature leaf	4.242
	SRR3591708	Shoot apex	9.994
	SRR3591709	Stem	9.482
	SRR3591710	White floral bud	302.126
	SRR3591711	White flower	316.116
	SRR3591712	Green floral bud	30.218
	SRR3591713	Yellow flower	50.210
SRP173429	SRR8316895	Juvenile bud stage	1.777
	SRR8316896	Juvenile bud stage	0.872
	SRR8316897	Juvenile bud stage	4.365
	SRR8316894	Third green stage	2.184
	SRR8316900	Third green stage	11.024
	SRR8316901	Third green stage	12.552
	SRR8316898	Complete white stage	33.183
	SRR8316899	Complete white stage	32.616
	SRR8316903	Complete white stage	71.242
	SRR8316902	Silver flowering stage	5.502
	SRR8316904	Silver flowering stage	9.304
	SRR8316905	Silver flowering stage	0.895
	SRR8316906	Gold flowering stage	1.163
	SRR8316907	Gold flowering stage	25.300
	SRR8316908	Gold flowering stage	114.733
SRP132670	SRR6706286	Control	29.289
	SRR6706287	Light intensity 50%	33.676
	SRR6706288	Light intensity 20%	29.049
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.070
	CNS0095593	Slightly white alabastrum(diploid) 2	13.891
	CNS0095594	Slightly white alabastrum(diploid) 3	6.525
	CNS0095595	Whole white alabastrum(diploid) 2	10.564
	CNS0095596	Whole white alabastrum(diploid) 3	3.757
	CNS0095597	Whole white alabastrum(diploid) 4	11.280
	CNS0095598	Silvery flower (diploied) 1	574.530
	CNS0095599	Silvery flower (diploied) 2	352.888
	CNS0095600	Silvery flower (diploied) 3	86.650
	CNS0095601	Golden flower (diploid) 1	123.200
	CNS0095602	Golden flower (diploid) 2	84.222
	CNS0095603	Golden flower (diploid) 3	80.683
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.973
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.947
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.392
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.672
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.743
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.903
	CNS0095610	Silvery flower (tetraploid) 1	59.011
	CNS0095611	Silvery flower (tetraploid) 2	117.582
	CNS0095612	Silvery flower (tetraploid) 3	27.846
	CNS0095613	Golden flower (tetraploid) 1	10.534
	CNS0095614	Golden flower (tetraploid) 2	19.236
	CNS0095615	Golden flower (tetraploid) 3	12.364
CRA001975	CRR073297	Stem 1	0.704
	CRR073298	Stem 2	0.526
	CRR073299	Stem 3	0.351
	CRR073300	Leaf 1	7.563
	CRR073301	Leaf 2	6.159
	CRR073302	Leaf 3	2.548
	CRR073303	Juvenile bud 1	4.857
	CRR073304	Juvenile bud 2	6.984
	CRR073305	Juvenile bud 3	17.528
	CRR073306	Third green 1	1.260
	CRR073307	Third green 2	2.622
	CRR073308	Third green 3	2.729
	CRR073309	Second white 1	0.092
	CRR073310	Second white 2	0.283
	CRR073311	Second white 3	0.169
	CRR073312	Silver flowering 1	0.687
	CRR073313	Silver flowering 2	0.761
	CRR073314	Silver flowering 3	0.405
	CRR073315	Gold flowering 1	0.254
	CRR073316	Gold flowering 2	0.132
	CRR073317	Gold flowering 3	0.327
	CRR073318	Tawny withering 1	1.598
	CRR073319	Tawny withering 2	1.648
	CRR073320	Tawny withering 3	0.523