Gene detail

Detail information of GWHGAAZE031656

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010659321.1	0	PREDICTED: sister chromatid cohesion 1 protein 3 [Vitis vinifera]
Swissprot	tr\|Q9FQ19\|SCC13_ARATH	8E-91	Sister chromatid cohesion 1 protein 3
trEMBL	tr\|A0A068UJE9\|A0A068UJE9_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_27 {ECO:0000313\|EMBL:CDP07718.1}
TAIR10	AT3G59550.1	5E-57	Rad21/Rec8-like family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	62770517	62775451	-
GWHAAZE00000009	mRNA	62770517	62775451	-
GWHAAZE00000009	exon	62775182	62775451	-
GWHAAZE00000009	exon	62775055	62775101	-
GWHAAZE00000009	exon	62774896	62774945	-
GWHAAZE00000009	exon	62774466	62774533	-
GWHAAZE00000009	exon	62774013	62774383	-
GWHAAZE00000009	exon	62773069	62773180	-
GWHAAZE00000009	exon	62772843	62772979	-
GWHAAZE00000009	exon	62771866	62772314	-
GWHAAZE00000009	exon	62771260	62771296	-
GWHAAZE00000009	exon	62770977	62771061	-
GWHAAZE00000009	exon	62770743	62770878	-
GWHAAZE00000009	exon	62770517	62770621	-
GWHAAZE00000009	five_prime_UTR	62775439	62775451	-
GWHAAZE00000009	CDS	62775182	62775438	-
GWHAAZE00000009	CDS	62775055	62775101	-
GWHAAZE00000009	CDS	62774896	62774945	-
GWHAAZE00000009	CDS	62774466	62774533	-
GWHAAZE00000009	CDS	62774013	62774383	-
GWHAAZE00000009	CDS	62773069	62773180	-
GWHAAZE00000009	CDS	62772843	62772979	-
GWHAAZE00000009	CDS	62771866	62772314	-
GWHAAZE00000009	CDS	62771260	62771296	-
GWHAAZE00000009	CDS	62770977	62771061	-
GWHAAZE00000009	CDS	62770743	62770878	-
GWHAAZE00000009	CDS	62770517	62770621	-

Transcript Sequence
>GWHTAAZE031694 TGCAGAGCGCATAATGTATCCAGATGTCCCCATTGCTTTGAGAATGTCAGGCCATCTTTTGCTTGGTGTTGTTCGGATATACTCGAAGAAAGTTGACTATCTATACAAAGATTGCAATGTTGTCCTGATAGGGTTAGGAAAGTTATTTTCTACTGCAGAAGTTAATGTACCAGTGGATGCAACTCATGCACCATTTCACTCTGTCACTTTGCCAGGGACTTTTGATCTTGATGCGTTGGATTTGGATGGTGATGACCTTTATCAAGATGGGTTTCATAATAATCATCTTAAAAGCCAAGAAGAGATAACGCTAACAGATCAAATTCCGTTTGGAAGAGACCCGTACATTCTCATCACCTTCGACAAGGATGTTCTGAAGGATTTATCACATGAGGAAGATGCTTCAGGATCAGGGGCCAGGCCAATGGAAGAAGATTCCAATCCATCAATGCCAGTACGTACAAGTGCCGGTTTTCAAGATCCCGGTCCTAGTAACCAGGCAGGAGCAGTTGATGAAAGGACTAACGAAGATAGTATTCCTCAAAATATTCCAGAAGTTGAAGTTATGCGCGATGCTGTCCATGATTTACCGTTGGGAAATGTTCCAAGTTGGCCTGACCAAGTGGATGACAGACTTGAACCAGATAGAGATTTGGAGCAGCTAATTTTTAAGGACATGCGAACTCCCGTGGTTGAAGAAATTTCAGTTCCTGGAGGCCATTCTATCCAGTCCCAGCAAAACCAAGAACTGCTTCCAAGTGCCTCAGACCAAGGCCATGGCATTTTTGATTCGCACAATTCATTTAGGGATGGATCGCCTGACTATGTAATTTGTCCAACTCCTCCTGTTGAGCAGCCAAAAGCTAGACCAAGAAAGAGAAAGCAGCTATTTGACGAGGCAACAGTATTGACTAACAAGTCTGTGAAAGAGGCATTGGACGATACTAGCAATATAGTTCGAGCAAAGAGGAATTGCCCTTGCTCTGCTTTGGGTGTTTGGAAATTGAGCAATAGATTAAAGAAGGATAAAGTCTTCTTTGATCCCATAAATACTGGGCTGTCTGCTGATCTTTGTAATATATTCACTGAAGATTCTATTTCTTCGAAACCTCATTTAGTTTCTACAGAGGCAGCTCAACGGGAGCCGAGTGTTGCACCAACTTCTGATCCCACAAATGATGTTGACATGGAATATGAACGTATTCGTAACTATGAAGGCCCTTCGACGAGCAATGTTTTGCCCGATATTGTGCCTCCTTCAGCTATATTCCCGTCTTCTCCAAATGACTTTTTGCCTTATCCAAGTAGTGGAGGAGATGACTTCACTCCTGGCTATGGAACCACTTCAGAACAGGTGCCAACAACTACTGGGACCAGAGTCACACCAACACCAGACCCTGGCGCATCTACTGGACCTCTTGGGTCTGATATGGACACCCCAGTGAATTTGTTTGACAACACAGGCCTTTCCGATATTCCTGAGATGGCTGATTCTGGAGTAGGGGAGCTAAGTTTTCTAGAAGATGATAATACACCAGCTGGAGCACAAGGGACTCCAGAAGTTGACTATTCTTTAAGAAAAGAAAATGGAACGCCTGAAATCAACACCTTATCTGTGAGAACAAGGGCCGTGGCTCAATTCCTAATAATAAAGTCGTCAACTGCCCCAATATCAGATGACCAATCGGGAGAACTTAGTATGAACAACATCTTAGAAGGGAAAAGAAGAAAAGTATCTGCTCGAATGTTTTATGAGACACTGGTTTTGAAGAGTTATGGACTTGTAGATTTGGAGCAAAAAGAACCTTATGGTGATATTACATTGAAGGTTATGCCTAAGCTTTCCAAGGAACAGTTTTCAAGTTAA

Network for GWHGAAZE031656

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04825.14	Rad21_Rec8_N	3	52	1.70E-14
PF04824.17	Rad21_Rec8	559	610	1.10E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06670	SCC1, MCD1, RAD21	Cell cycle	map04110
K06670	SCC1, MCD1, RAD21	Cell cycle - yeast	map04111

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.964
	SRR3591706	second leaf	0.884
	SRR3591707	mature leaf	0.244
	SRR3591708	Shoot apex	10.698
	SRR3591709	Stem	2.608
	SRR3591710	White floral bud	0.740
	SRR3591711	White flower	1.232
	SRR3591712	Green floral bud	0.354
	SRR3591713	Yellow flower	0.301
SRP173429	SRR8316895	Juvenile bud stage	1.802
	SRR8316896	Juvenile bud stage	1.438
	SRR8316897	Juvenile bud stage	0.330
	SRR8316894	Third green stage	0.755
	SRR8316900	Third green stage	0.389
	SRR8316901	Third green stage	0.425
	SRR8316898	Complete white stage	0.023
	SRR8316899	Complete white stage	0.659
	SRR8316903	Complete white stage	0.260
	SRR8316902	Silver flowering stage	0.056
	SRR8316904	Silver flowering stage	0.092
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.022
	SRR8316907	Gold flowering stage	0.063
	SRR8316908	Gold flowering stage	0.108
SRP132670	SRR6706286	Control	0.408
	SRR6706287	Light intensity 50%	0.369
	SRR6706288	Light intensity 20%	0.622
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.212
	CNS0095593	Slightly white alabastrum(diploid) 2	0.408
	CNS0095594	Slightly white alabastrum(diploid) 3	0.621
	CNS0095595	Whole white alabastrum(diploid) 2	1.090
	CNS0095596	Whole white alabastrum(diploid) 3	0.547
	CNS0095597	Whole white alabastrum(diploid) 4	0.474
	CNS0095598	Silvery flower (diploied) 1	0.777
	CNS0095599	Silvery flower (diploied) 2	0.381
	CNS0095600	Silvery flower (diploied) 3	0.135
	CNS0095601	Golden flower (diploid) 1	0.314
	CNS0095602	Golden flower (diploid) 2	0.220
	CNS0095603	Golden flower (diploid) 3	0.192
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.781
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.528
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.866
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.795
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.074
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.074
	CNS0095610	Silvery flower (tetraploid) 1	0.313
	CNS0095611	Silvery flower (tetraploid) 2	0.407
	CNS0095612	Silvery flower (tetraploid) 3	0.279
	CNS0095613	Golden flower (tetraploid) 1	0.227
	CNS0095614	Golden flower (tetraploid) 2	0.148
	CNS0095615	Golden flower (tetraploid) 3	0.103
CRA001975	CRR073297	Stem 1	2.362
	CRR073298	Stem 2	1.810
	CRR073299	Stem 3	2.499
	CRR073300	Leaf 1	0.286
	CRR073301	Leaf 2	0.593
	CRR073302	Leaf 3	0.175
	CRR073303	Juvenile bud 1	1.062
	CRR073304	Juvenile bud 2	0.192
	CRR073305	Juvenile bud 3	0.205
	CRR073306	Third green 1	0.023
	CRR073307	Third green 2	0.084
	CRR073308	Third green 3	0.065
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.024
	CRR073311	Second white 3	0.195
	CRR073312	Silver flowering 1	0.099
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.062
	CRR073316	Gold flowering 2	0.028
	CRR073317	Gold flowering 3	0.193
	CRR073318	Tawny withering 1	1.650
	CRR073319	Tawny withering 2	1.116
	CRR073320	Tawny withering 3	2.157