Gene detail

Detail information of GWHGAAZE031677

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002526765.1	1.9602E-176	Makorin-1, putative [Ricinus communis]
Swissprot	tr\|Q5ZA07\|C3H41_ORYSJ	2E-150	E3 ubiquitin-protein ligase makorin
trEMBL	tr\|B9SL96\|B9SL96_RICCO	7E-177	Makorin-1, putative {ECO:0000313\|EMBL:EEF35619.1}
TAIR10	AT3G08505.2	2E-112	zinc finger (CCCH-type/C3HC4-type RING finger) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	63070798	63073612	-
GWHAAZE00000009	mRNA	63070798	63073612	-
GWHAAZE00000009	exon	63070798	63070834	-
GWHAAZE00000009	exon	63071184	63071272	-
GWHAAZE00000009	exon	63071935	63072004	-
GWHAAZE00000009	exon	63072514	63073117	-
GWHAAZE00000009	exon	63073293	63073461	-
GWHAAZE00000009	exon	63073586	63073612	-
GWHAAZE00000009	CDS	63073586	63073612	-
GWHAAZE00000009	CDS	63073293	63073461	-
GWHAAZE00000009	CDS	63072514	63073117	-
GWHAAZE00000009	CDS	63071935	63072004	-
GWHAAZE00000009	CDS	63071184	63071272	-
GWHAAZE00000009	CDS	63070798	63070834	-

Transcript Sequence
>GWHTAAZE031715 ATGGAGCATGTCTTAAAGGGGACCATTGTTTGTACCTTTTATCAAAAAGGAGTTTGCTCTTATGGAAGCCGCTGTAGATACGAGCACATTAAACCCTCTCGTCAACAATCTTCGGCTCCATCTTCCTCCAACCATCGCCAATCTTTAGTTTCAGATTCTGTTCCTGCGGTTTGCGCTTCAAGAACCACACCAGTTAGTGTTACAGCAGAGCTCTCAGCTTTAAGTAGACCCTTCTTTCCACCACCTAAACCAGTATGGAGTCAAAATTCTGGGCCAAATGATTCACTAGATGATGATTACGCCGCTGAACATCGAAGTGCCAACCCATCTGACAGGGCAATCTGTTCTTTTGCCGCTGCTGGTAATTGTCCACGCGGAGAAAAATGCCCTCATCTTCACGGCGATTTATGTGCTACTTGTGGAAAACATTGCTTACACCCGTTTAGGCCCGAGGAGAGAGAGGAGCATATAAAAACCTGTGAGAAAAAACAAAAACATTTGGAGGCGCTAAAACGCAGTCAAAATATAGAGTGCAGTGTTTGCCTCGAACGTGTTCTTTCAAAGCCCACTGCTGCTGAACGAAAATTTGGGTTGCTATCAGAATGCGATCATCCCTTTTGTGTATCATGCATAAGAAATTGGCGTAGTAGTTCTCCAACCTCTGGAATGGATGTTAATTCTGCATTAAGGGCTTGCCCAATTTGTCGAAAGCTTTCATATTTTGTGATTCCTAGTGTGATTTGGTATGCCAATAAAGAAGAGAAGCAAGAAATTGTAGACAACTATAAAGCAAGACTCAGGTCTATTGATTGCAAGCACTTTGACTATGGAAACGGGAGTTGCCCTTTTGGTACTAGTTGTTTTTACAAGCACGCATATCGTGATGGCCGTCTGGAGGAAACAGTTCTGCGCCATCTCGGGGCTGAAGATGGAAATACAGTGATTGCTAAAGATATTAGGCTCTCAGACTTCATAAGTAGTTTGCACATAAGGTGA

Network for GWHGAAZE031677

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF18044.2	zf-CCCH_4	10	29	5.30E-07
PF14608.7	zf-CCCH_2	114	133	1.1
PF13639.7	zf-RING_2	177	236	2.80E-07
PF14608.7	zf-CCCH_2	270	292	0.0026

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C3H
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.049
	SRR3591706	second leaf	13.966
	SRR3591707	mature leaf	16.723
	SRR3591708	Shoot apex	19.500
	SRR3591709	Stem	20.245
	SRR3591710	White floral bud	40.201
	SRR3591711	White flower	29.608
	SRR3591712	Green floral bud	27.785
	SRR3591713	Yellow flower	31.397
SRP173429	SRR8316895	Juvenile bud stage	13.295
	SRR8316896	Juvenile bud stage	18.938
	SRR8316897	Juvenile bud stage	7.627
	SRR8316894	Third green stage	10.550
	SRR8316900	Third green stage	28.272
	SRR8316901	Third green stage	26.258
	SRR8316898	Complete white stage	12.873
	SRR8316899	Complete white stage	35.636
	SRR8316903	Complete white stage	22.410
	SRR8316902	Silver flowering stage	21.089
	SRR8316904	Silver flowering stage	30.823
	SRR8316905	Silver flowering stage	13.091
	SRR8316906	Gold flowering stage	52.428
	SRR8316907	Gold flowering stage	48.126
	SRR8316908	Gold flowering stage	50.046
SRP132670	SRR6706286	Control	26.098
	SRR6706287	Light intensity 50%	29.562
	SRR6706288	Light intensity 20%	29.484
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.223
	CNS0095593	Slightly white alabastrum(diploid) 2	10.590
	CNS0095594	Slightly white alabastrum(diploid) 3	12.231
	CNS0095595	Whole white alabastrum(diploid) 2	20.286
	CNS0095596	Whole white alabastrum(diploid) 3	22.513
	CNS0095597	Whole white alabastrum(diploid) 4	25.581
	CNS0095598	Silvery flower (diploied) 1	20.725
	CNS0095599	Silvery flower (diploied) 2	18.314
	CNS0095600	Silvery flower (diploied) 3	36.502
	CNS0095601	Golden flower (diploid) 1	19.121
	CNS0095602	Golden flower (diploid) 2	31.173
	CNS0095603	Golden flower (diploid) 3	30.974
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.394
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.353
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.517
	CNS0095607	Whole white alabastrum(tetraploid) 1	23.216
	CNS0095608	Whole white alabastrum(tetraploid) 2	28.068
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.617
	CNS0095610	Silvery flower (tetraploid) 1	31.022
	CNS0095611	Silvery flower (tetraploid) 2	41.192
	CNS0095612	Silvery flower (tetraploid) 3	34.629
	CNS0095613	Golden flower (tetraploid) 1	22.981
	CNS0095614	Golden flower (tetraploid) 2	34.354
	CNS0095615	Golden flower (tetraploid) 3	46.517
CRA001975	CRR073297	Stem 1	28.425
	CRR073298	Stem 2	24.620
	CRR073299	Stem 3	27.427
	CRR073300	Leaf 1	35.901
	CRR073301	Leaf 2	27.713
	CRR073302	Leaf 3	28.385
	CRR073303	Juvenile bud 1	45.288
	CRR073304	Juvenile bud 2	38.050
	CRR073305	Juvenile bud 3	34.783
	CRR073306	Third green 1	33.337
	CRR073307	Third green 2	28.884
	CRR073308	Third green 3	28.291
	CRR073309	Second white 1	34.424
	CRR073310	Second white 2	42.951
	CRR073311	Second white 3	46.885
	CRR073312	Silver flowering 1	46.848
	CRR073313	Silver flowering 2	43.162
	CRR073314	Silver flowering 3	39.049
	CRR073315	Gold flowering 1	24.916
	CRR073316	Gold flowering 2	32.534
	CRR073317	Gold flowering 3	24.724
	CRR073318	Tawny withering 1	35.011
	CRR073319	Tawny withering 2	19.885
	CRR073320	Tawny withering 3	27.709