Gene detail

Detail information of GWHGAAZE031683

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011047407.1	7.34065E-97	PREDICTED: transcription factor MYB46-like [Populus euphratica]
Swissprot	tr\|Q9LXV2\|MYB46_ARATH	2E-67	Transcription factor MYB46
trEMBL	tr\|A0A061E379\|A0A061E379_THECC	3E-97	Myb domain protein 83 {ECO:0000313\|EMBL:EOX96693.1}
TAIR10	AT5G12870.1	2E-54	myb domain protein 46

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	63137664	63140441	-
GWHAAZE00000009	mRNA	63137664	63140441	-
GWHAAZE00000009	exon	63137664	63137801	-
GWHAAZE00000009	exon	63137969	63138353	-
GWHAAZE00000009	exon	63140137	63140441	-
GWHAAZE00000009	CDS	63140137	63140441	-
GWHAAZE00000009	CDS	63137969	63138353	-
GWHAAZE00000009	CDS	63137664	63137801	-

Transcript Sequence
>GWHTAAZE031721 ATGAGAAAGCCCGCGGATCCACTGGCAATGGTGAAAGATCAAAAAGTGAATATGAACAATACTAGTATCAATAAGGTGAGGAAGGGGCTGTGGTCGCCAGAGGAAGATGAGAAGCTGATGAGTTACATGTTGAGGAACGGGCACGGTTGTTGGACGGATATTGCTAGGAATGCTGGCCTACAGAGGTGTGGAAAGAGTTGCAGACTCCGTTGGATTAATTACTTGAGGCCTGATCTCAAAAGGGGCGCGTTTTCACCCCATGAGGAGCAACTCATTGTTCATTTGCATTCCATCCTTGGCAACAGGTGGTCCCAAATTGCAGCGCGTCTTCCCGGAAGGACAGACAATGAAATAAAAAACTTCTGGAACTCCACGATAAAGAAAAGACTGAAGAACAATAACAACACCTCTACTTCCACAACCTCACCAAACACAAGTGACACATCAAACCCTAGAGACATTGTGGGAGATCTCATGTCCATGAATGACCATGACATCATGGCCATGTGCATGGACTCGTCTTCTTCATCCTCGTCATCCATCCAACCTAGGATTTCGTGCAACAGGTTCGACCCTTTCCCTCCCCTAGACAACAGCTATGGCCTCCTAAACAGTGGAGCTGGTTTTTTCGATGCGTCAACGTGTTTAGATCAGATTGGTGGAGTAGGAGATGGGGTTTTGGGGATTATGGCGATGAAAGTTGAGGATGTGGTTGGGTTTGGAAATGATCATTGGCAAGGAGAAAGCTTTAGGATGGGAGAGTTGGATTGGGAGGGTTTGTTGGCTAATGTCTCCTCCTTACCTTACCTTGATTTCCATGTTGAATAA

Network for GWHGAAZE031683

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	28	75	7.70E-13
PF00249.32	Myb_DNA-binding	81	124	4.30E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.881
	SRR3591706	second leaf	1.342
	SRR3591707	mature leaf	0.155
	SRR3591708	Shoot apex	0.760
	SRR3591709	Stem	23.193
	SRR3591710	White floral bud	0.263
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.875
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.815
	SRR8316896	Juvenile bud stage	0.929
	SRR8316897	Juvenile bud stage	0.225
	SRR8316894	Third green stage	0.326
	SRR8316900	Third green stage	0.929
	SRR8316901	Third green stage	1.037
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.009
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.096
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.004
SRP132670	SRR6706286	Control	1.066
	SRR6706287	Light intensity 50%	0.484
	SRR6706288	Light intensity 20%	0.691
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.378
	CNS0095593	Slightly white alabastrum(diploid) 2	0.344
	CNS0095594	Slightly white alabastrum(diploid) 3	0.508
	CNS0095595	Whole white alabastrum(diploid) 2	0.291
	CNS0095596	Whole white alabastrum(diploid) 3	0.956
	CNS0095597	Whole white alabastrum(diploid) 4	0.079
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.039
	CNS0095601	Golden flower (diploid) 1	0.044
	CNS0095602	Golden flower (diploid) 2	0.111
	CNS0095603	Golden flower (diploid) 3	0.074
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.002
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.197
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.097
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.535
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.182
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.034
CRA001975	CRR073297	Stem 1	0.319
	CRR073298	Stem 2	0.655
	CRR073299	Stem 3	1.596
	CRR073300	Leaf 1	1.274
	CRR073301	Leaf 2	0.844
	CRR073302	Leaf 3	1.022
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.193
	CRR073305	Juvenile bud 3	0.110
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.057
	CRR073308	Third green 3	0.215
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.199
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	13.462
	CRR073319	Tawny withering 2	8.718
	CRR073320	Tawny withering 3	13.348