Detail information of GWHGAAZE031686


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_003533897.10PREDICTED: zinc finger CCCH domain-containing protein 30-like isoform X1 [Glycine max]
Swissprottr|P93755|C3H30_ARATH0Zinc finger CCCH domain-containing protein 30
trEMBLtr|K7LCZ7|K7LCZ7_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G15600.2}
TAIR10AT2G41900.10CCCH-type zinc finger protein with ARM repeat domain

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene6323156563233664-
GWHAAZE00000009mRNA6323156563233664-
GWHAAZE00000009exon6323320563233664-
GWHAAZE00000009exon6323156563233024-
GWHAAZE00000009CDS6323320563233664-
GWHAAZE00000009CDS6323156563233024-
Transcript Sequence

Network for GWHGAAZE031686

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12796.8Ank_2571265.20E-10
PF00642.25zf-CCCH2222426.20E-05
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC3H

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding
GO:0046872molecular_functionmetal ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf59.366
SRR3591706second leaf40.344
SRR3591707mature leaf56.224
SRR3591708Shoot apex54.680
SRR3591709Stem78.440
SRR3591710White floral bud80.136
SRR3591711White flower61.770
SRR3591712Green floral bud56.210
SRR3591713Yellow flower26.349
SRP173429 SRR8316895Juvenile bud stage 20.590
SRR8316896Juvenile bud stage 19.991
SRR8316897Juvenile bud stage 9.999
SRR8316894Third green stage 14.541
SRR8316900Third green stage 37.089
SRR8316901Third green stage 37.769
SRR8316898Complete white stage 24.252
SRR8316899Complete white stage 63.066
SRR8316903Complete white stage 60.637
SRR8316902Silver flowering stage21.440
SRR8316904Silver flowering stage28.009
SRR8316905Silver flowering stage15.748
SRR8316906Gold flowering stage 36.006
SRR8316907Gold flowering stage 34.766
SRR8316908Gold flowering stage 38.818
SRP132670SRR6706286Control59.220
SRR6706287Light intensity 50%58.766
SRR6706288Light intensity 20%59.089
CNP0000432CNS0095592Slightly white alabastrum(diploid) 122.185
CNS0095593Slightly white alabastrum(diploid) 223.560
CNS0095594Slightly white alabastrum(diploid) 317.322
CNS0095595Whole white alabastrum(diploid) 219.966
CNS0095596Whole white alabastrum(diploid) 315.828
CNS0095597Whole white alabastrum(diploid) 418.037
CNS0095598Silvery flower (diploied) 138.418
CNS0095599Silvery flower (diploied) 230.363
CNS0095600Silvery flower (diploied) 360.287
CNS0095601Golden flower (diploid) 135.331
CNS0095602Golden flower (diploid) 256.596
CNS0095603Golden flower (diploid) 353.191
CNS0095604Slightly white alabastrum(tetraploid) 127.962
CNS0095605Slightly white alabastrum(tetraploid) 221.997
CNS0095606Slightly white alabastrum(tetraploid) 363.999
CNS0095607Whole white alabastrum(tetraploid) 118.554
CNS0095608Whole white alabastrum(tetraploid) 214.814
CNS0095609Whole white alabastrum(tetraploid) 335.140
CNS0095610Silvery flower (tetraploid) 140.056
CNS0095611Silvery flower (tetraploid) 239.959
CNS0095612Silvery flower (tetraploid) 391.653
CNS0095613Golden flower (tetraploid) 117.373
CNS0095614Golden flower (tetraploid) 231.990
CNS0095615Golden flower (tetraploid) 326.354
CRA001975CRR073297Stem 177.117
CRR073298Stem 272.788
CRR073299Stem 376.627
CRR073300Leaf 198.227
CRR073301Leaf 293.177
CRR073302Leaf 369.654
CRR073303Juvenile bud 183.754
CRR073304Juvenile bud 297.504
CRR073305Juvenile bud 3135.238
CRR073306Third green 1199.464
CRR073307Third green 2126.786
CRR073308Third green 3163.645
CRR073309Second white 1178.509
CRR073310Second white 2134.306
CRR073311Second white 3121.924
CRR073312Silver flowering 169.269
CRR073313Silver flowering 264.593
CRR073314Silver flowering 361.453
CRR073315Gold flowering 131.484
CRR073316Gold flowering 240.198
CRR073317Gold flowering 341.141
CRR073318Tawny withering 174.260
CRR073319Tawny withering 261.928
CRR073320Tawny withering 365.266