Gene detail

Detail information of GWHGAAZE031687

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008231249.1	0	PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming] [Prunus mume]
COG	YP_002489496.1	5E-19	cellulose synthase
Swissprot	tr\|Q941L0\|CESA3_ARATH	0	Cellulose synthase A catalytic subunit 3 [UDP-forming]
trEMBL	tr\|M5X614\|M5X614_PRUPE	0	Cellulose synthase {ECO:0000256\|RuleBase:RU361116}
TAIR10	AT5G05170.1	0	Cellulose synthase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	63280625	63291578	-
GWHAAZE00000009	mRNA	63280625	63291578	-
GWHAAZE00000009	exon	63280625	63281209	-
GWHAAZE00000009	exon	63283254	63283604	-
GWHAAZE00000009	exon	63284171	63284373	-
GWHAAZE00000009	exon	63285359	63285623	-
GWHAAZE00000009	exon	63286020	63286220	-
GWHAAZE00000009	exon	63286330	63286455	-
GWHAAZE00000009	exon	63287300	63287437	-
GWHAAZE00000009	exon	63287531	63287876	-
GWHAAZE00000009	exon	63288304	63288570	-
GWHAAZE00000009	exon	63289486	63289684	-
GWHAAZE00000009	exon	63289758	63289896	-
GWHAAZE00000009	exon	63290321	63290541	-
GWHAAZE00000009	exon	63290991	63291186	-
GWHAAZE00000009	exon	63291555	63291578	-
GWHAAZE00000009	CDS	63291555	63291578	-
GWHAAZE00000009	CDS	63290991	63291186	-
GWHAAZE00000009	CDS	63290321	63290541	-
GWHAAZE00000009	CDS	63289758	63289896	-
GWHAAZE00000009	CDS	63289486	63289684	-
GWHAAZE00000009	CDS	63288304	63288570	-
GWHAAZE00000009	CDS	63287531	63287876	-
GWHAAZE00000009	CDS	63287300	63287437	-
GWHAAZE00000009	CDS	63286330	63286455	-
GWHAAZE00000009	CDS	63286020	63286220	-
GWHAAZE00000009	CDS	63285359	63285623	-
GWHAAZE00000009	CDS	63284171	63284373	-
GWHAAZE00000009	CDS	63283254	63283604	-
GWHAAZE00000009	CDS	63280625	63281209	-

Transcript Sequence
>GWHTAAZE031725 ATGGAGTCTGAAGGAGAAACCGGGGAGAAGTCAATGAAGAGCATTGGTGGTCAGGTCTGCCAGATCTGTGGTGATAATGTTGGCATGGATGTTGATGGTGAACCGTTTGTCGCTTGTGATGTATGCGCATTCCCAGTTTGCAGGCCATGTTACGAGTACGAGCAGAAGGATGGGAATCAGTCTTGCCCTCAGTGCAAAACCAGATACAAGAAACATAAAGGAATTCCTGCACCTCATGGCACCGGAGAGGACGATGGTTATGCCAATGAAGGTGTCATTGATCTTCAATACTCGTCAGATAATCAAACTGAGAAGCAGAAGGTTTCAGATCGCATGTTAAGTTGGCACATGACATATGGAAGAGGGGAAGATGTTGGGCAACCAAAGTATGATAAAGAGGTCTCCCACAACCACATTCCTTTGCTGACAAACAGGCAGGAGGTTTCCGGAGATTTGTCTGCAGCATCACCTGAACGTCTTTCTGTAGCGTCTCCTGGGGGGAAACGCATACATTCTCTTCCTTATGCGGCGGATGTGAATCAATCACGTACATCTCTCTCTCTCTCTCTCTTTTCTTTGTCTAATATTAGAGTTGTGGATCCTGTGAGGGAATTTGGATCCCCAGGATTAGGCAATGTTGCCTGGAAAGAGAGAGTGGATGGGTGGAAAATGAAGCAGGAAAAGAATGTTGTTCCAATGACCACCACTAGCAACGCTGCTTCTGAAAGAGGTGGAGATATTGATGCCAGTACCGACGTGCTGGTTGATGATTCTTTATTGAATGATGAAGCTAGGCAGCCTCTTTCAAGGAAAGTTTCTATCCCATCTTCCAGGATAAATCCTTACCGGATGGTTATTGTCCTGCGGCTTGTAATTCTCTGTGTATTTTTGCACTACCGGATAACAAATCCAGTCACCAATGCCTATCCCTTGTGGTTGTTATCTGTGATATGTGAGATTTGGTTTGCAATATCTTGGATATTGGATCAGTTCCCTAAATGGCTTCCCGTAAACCGTGAAACGTATCTTGATCGGCTTTCACTTAGATATGACCGAGAAGGAGAGCCGTCACAATTAGCGGCTGTTGACATTTTCGTCAGTACTGTTGACCCATTAAAAGAGCCTCCTCTTGTTACAGCCAACACTGTTTTATCAATTCTTGCAGTTGACTACCCAGTTGACAAGGTTTCTTGCTACGTCTCTGATGATGGAGCAGCCATGTTGACATTCGAAGCGCTGTCTGAAACATCAGAATTTGCAAGAAAATGGGTTCCCTTCTGCAAGAAGTATAGCATTGAGCCCCGGGCTCCAGAATGGTACTTCTCTCAGAAGATTGATTACTTGAAAGACAAAGTTCAGCCATCATTTGTCAAAGACCGTAGAGCTATGAAGAGAGAATATGAAGAATTCAAAATTCGTGTTAATGGACTTGTTGCCAAGGCTCAGAAAGTTCCGGAAGAAGGATGGATAATGCAAGATGGTACGCCCTGGCCTGGAAATAATACCAGGGATCATCCAGGAATGATCCAGGTTTTCCTAGGGCAAAGTGGAGGGCTTGACAGTGACGGCAATGAGCTGCCACGGTTAGTGTATGTTTCTCGTGAGAAGCGTCCAGGCTTCCAGCATCACAAGAAAGCTGGTGCAATGAATTCACTTGTTCGCGTATCAGCTGTCCTTACCAACGGACCCTTCTTGTTGAATCTTGATTGTGATCACTATATAAACAATAGCAAGGCATTGAGAGAAGCAATGTGTTTTATGATGGATCCCAACCTTGGAAAATATGTCTGCTATGTTCAGTTCCCACAAAGATTTGATGGTATTGATAGGAATGATCGATACGCCAACCGAAATACTATCAACTTGAGAGGTTTGGATGGGATTCAAGGCCCTGTTTATGTGGGTACTGGGTGTGTCTTTAATAGAACAGCGCTATATGGTTATGAGCCTCCTCTCAAACCTAAGCAGAAAAAGGCAGGGTTTTTCTCTTCCTGTTGCGGTGGATCACGAAAGAAAAATTCCAAGTCTAGTAAGAAAGGGTTGGACAAAAAGAAATCTAGCAAGCACGTTGACCCAACTGTGCCAATATTCAGCTTGGACGATATAGAGGAGGGAGTTGAAGGTGCTGGATTTGATGATGAGAAATCACTACTTATGTCACAAATGACCCTTGAGAAAAGATTTGGTCAGTCTGCCGTTTTTGTTGCCTCCACACTTATGGAAAATGGAGGCGTACCTCAGTCTGCAACACCAGAGGCTCTTCTTAAGGAGGCTATTCATGTCATCAGTTGCGGATACGAGGATAAAACGGACTGGGGACAAGAGATAGGATGGATCTATGGTTCAGTGACAGAGGATATTCTTACGGGATTCAAGATGCATGCCCGTGGTTGGCGTTCAATTTACTGCATGCCTCTTAGGCCAGCATTTAAGGGTTCTGCCCCTATTAATCTTTCAGACCGTCTTAACCAAGTGCTTCGTTGGGCTTTGGGTTCTGTTGAAATTCTTCTTAGCCGGCATTGCCCTATCTGGTACGGTTATGGTGGAAGGCTAAAATGGCTCGAGAGATTTGCGTATATAAACACAACCATTTACCCAATCACTGCTATTCCTCTCCTGCTTTATTGTACTCTTCCAGCTGTTTGCCTACTCACTGGGAAGTTTATTATACCACAGATTAGTAACCTTGCAAGTATGTGGTTTATCTCCCTCTTTCTCTCCATCTTTGCCACCGGCATACTCGAGATGAGGTGGAGCGGCGTCGGCATAGATGAATGGTGGAGGAACGAACAATTTTGGGTCATCGGTGGTGTATCTGCCCATTTTTTCGCTGTCATCCAAGGCCTTCTCAAAGTCCTTGCTGGGATTGACACCAACTTCACTGTCACCTCCAAAGCCTCTGATGAGGATGGCGACTTTGCCGAGCTCTACCTCTTCAAATGGACCACCCTCCTCATCCCACCTACCACCCTCCTCATAGTCAACATAGTTGGGGTGGTGGCCGGAATTTCGTACGCGATCAATAGTGGGTACCAATCGTGGGGCCCACTTTTTGGTAAGTTGTTCTTCGCCTTTTGGGTGATTGTTCATTTGTATCCTTTCCTCAAAGGTTTGATGGGCCGGCAGAACCGCACGCCCACCATTGTTGTCGTGTGGTCCATTCTTCTAGCGTCCATTTTCTCATTGTTGTGGGTCCGGATTGACCCATTTACAACTAGAGTTACTGGTCCAGATGTTGAGGTGTGCGGAATTAATTGTTAA

Network for GWHGAAZE031687

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14569.7	zf-UDP	10	85	2.30E-35
PF03552.15	Cellulose_synt	362	1080	0

Protein Sequence

>GWHPAAZE031707
MESEGETGEKSMKSIGGQVCQICGDNVGMDVDGEPFVACDVCAFPVCRPCYEYEQKDGNQSCPQCKTRYKKHKGIPAPHGTGEDDGYANEGVIDLQYSSDNQTEKQKVSDRMLSWHMTYGRGEDVGQPKYDKEVSHNHIPLLTNRQEVSGDLSAASPERLSVASPGGKRIHSLPYAADVNQSRTSLSLSLFSLSNIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMTTTSNAASERGGDIDASTDVLVDDSLLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVILCVFLHYRITNPVTNAYPLWLLSVICEIWFAISWILDQFPKWLPVNRETYLDRLSLRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYSIEPRAPEWYFSQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRVNGLVAKAQKVPEEGWIMQDGTPWPGNNTRDHPGMIQVFLGQSGGLDSDGNELPRLVYVSREKRPGFQHHKKAGAMNSLVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKYVCYVQFPQRFDGIDRNDRYANRNTINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKQKKAGFFSSCCGGSRKKNSKSSKKGLDKKKSSKHVDPTVPIFSLDDIEEGVEGAGFDDEKSLLMSQMTLEKRFGQSAVFVASTLMENGGVPQSATPEALLKEAIHVISCGYEDKTDWGQEIGWIYGSVTEDILTGFKMHARGWRSIYCMPLRPAFKGSAPINLSDRLNQVLRWALGSVEILLSRHCPIWYGYGGRLKWLERFAYINTTIYPITAIPLLLYCTLPAVCLLTGKFIIPQISNLASMWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHFFAVIQGLLKVLAGIDTNFTVTSKASDEDGDFAELYLFKWTTLLIPPTTLLIVNIVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDVEVCGINC

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0030244	biological_process	cellulose biosynthetic process
GO:0016020	cellular_component	membrane
GO:0016760	molecular_function	cellulose synthase (UDP-forming) activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	134.853
	SRR3591706	second leaf	61.640
	SRR3591707	mature leaf	33.037
	SRR3591708	Shoot apex	50.496
	SRR3591709	Stem	100.769
	SRR3591710	White floral bud	48.175
	SRR3591711	White flower	34.606
	SRR3591712	Green floral bud	79.746
	SRR3591713	Yellow flower	20.693
SRP173429	SRR8316895	Juvenile bud stage	43.331
	SRR8316896	Juvenile bud stage	58.515
	SRR8316897	Juvenile bud stage	22.355
	SRR8316894	Third green stage	25.405
	SRR8316900	Third green stage	81.080
	SRR8316901	Third green stage	71.881
	SRR8316898	Complete white stage	26.317
	SRR8316899	Complete white stage	89.196
	SRR8316903	Complete white stage	40.707
	SRR8316902	Silver flowering stage	20.100
	SRR8316904	Silver flowering stage	30.131
	SRR8316905	Silver flowering stage	13.776
	SRR8316906	Gold flowering stage	55.354
	SRR8316907	Gold flowering stage	46.909
	SRR8316908	Gold flowering stage	39.282
SRP132670	SRR6706286	Control	68.127
	SRR6706287	Light intensity 50%	78.017
	SRR6706288	Light intensity 20%	88.112
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	47.580
	CNS0095593	Slightly white alabastrum(diploid) 2	45.796
	CNS0095594	Slightly white alabastrum(diploid) 3	46.872
	CNS0095595	Whole white alabastrum(diploid) 2	42.591
	CNS0095596	Whole white alabastrum(diploid) 3	45.239
	CNS0095597	Whole white alabastrum(diploid) 4	46.252
	CNS0095598	Silvery flower (diploied) 1	42.352
	CNS0095599	Silvery flower (diploied) 2	41.425
	CNS0095600	Silvery flower (diploied) 3	86.533
	CNS0095601	Golden flower (diploid) 1	35.000
	CNS0095602	Golden flower (diploid) 2	78.671
	CNS0095603	Golden flower (diploid) 3	75.400
	CNS0095604	Slightly white alabastrum(tetraploid) 1	56.164
	CNS0095605	Slightly white alabastrum(tetraploid) 2	46.609
	CNS0095606	Slightly white alabastrum(tetraploid) 3	107.366
	CNS0095607	Whole white alabastrum(tetraploid) 1	42.465
	CNS0095608	Whole white alabastrum(tetraploid) 2	31.015
	CNS0095609	Whole white alabastrum(tetraploid) 3	89.369
	CNS0095610	Silvery flower (tetraploid) 1	54.275
	CNS0095611	Silvery flower (tetraploid) 2	65.189
	CNS0095612	Silvery flower (tetraploid) 3	40.158
	CNS0095613	Golden flower (tetraploid) 1	20.220
	CNS0095614	Golden flower (tetraploid) 2	41.838
	CNS0095615	Golden flower (tetraploid) 3	33.846
CRA001975	CRR073297	Stem 1	88.868
	CRR073298	Stem 2	79.740
	CRR073299	Stem 3	98.111
	CRR073300	Leaf 1	91.101
	CRR073301	Leaf 2	81.494
	CRR073302	Leaf 3	100.281
	CRR073303	Juvenile bud 1	87.480
	CRR073304	Juvenile bud 2	88.188
	CRR073305	Juvenile bud 3	139.631
	CRR073306	Third green 1	32.890
	CRR073307	Third green 2	24.282
	CRR073308	Third green 3	34.126
	CRR073309	Second white 1	32.495
	CRR073310	Second white 2	20.922
	CRR073311	Second white 3	30.792
	CRR073312	Silver flowering 1	23.755
	CRR073313	Silver flowering 2	27.155
	CRR073314	Silver flowering 3	18.075
	CRR073315	Gold flowering 1	51.050
	CRR073316	Gold flowering 2	81.809
	CRR073317	Gold flowering 3	59.797
	CRR073318	Tawny withering 1	93.326
	CRR073319	Tawny withering 2	57.235
	CRR073320	Tawny withering 3	96.509