Gene detail

Detail information of GWHGAAZE031690

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002313308.2	7.234E-151	hypothetical protein POPTR_0009s06520g, partial [Populus trichocarpa]
COG	YP_001820212.1	6E-27	galacturan 1,4-alpha-galacturonidase
Swissprot	tr\|Q9SFB7\|QRT2_ARATH	3E-137	Polygalacturonase QRT2 (Precursor)
trEMBL	tr\|B9HNQ2\|B9HNQ2_POPTR	3E-151	Uncharacterized protein {ECO:0000313\|EMBL:EEE87263.2} (Fragment)
TAIR10	AT3G07970.1	1E-106	Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	63372996	63376868	+
GWHAAZE00000009	mRNA	63372996	63376868	+
GWHAAZE00000009	exon	63372996	63373310	+
GWHAAZE00000009	exon	63374132	63374305	+
GWHAAZE00000009	exon	63374434	63374454	+
GWHAAZE00000009	exon	63374918	63375125	+
GWHAAZE00000009	exon	63375514	63375595	+
GWHAAZE00000009	exon	63375721	63375829	+
GWHAAZE00000009	exon	63376090	63376206	+
GWHAAZE00000009	exon	63376560	63376868	+
GWHAAZE00000009	CDS	63372996	63373310	+
GWHAAZE00000009	CDS	63374132	63374305	+
GWHAAZE00000009	CDS	63374434	63374454	+
GWHAAZE00000009	CDS	63374918	63375125	+
GWHAAZE00000009	CDS	63375514	63375595	+
GWHAAZE00000009	CDS	63375721	63375829	+
GWHAAZE00000009	CDS	63376090	63376206	+
GWHAAZE00000009	CDS	63376560	63376868	+

Transcript Sequence
>GWHTAAZE031728 ATGGTTCTAAAATGCCACTTTCTCTCACTACTCCTAATCATCTTCATAAATTATCTCTCATCTGTTAGCACTTCACAAGAGGTGGTCCCACTTTCTAAAAATCTTGATCAAACCATTGTTCATGAATCCAACTCAACATCTTTTGGCACCATAAACTTGGGGTCCAAATATCCAAATCTTATAAAGTATGGTGGTGAAATCTATAATTTTGAAAAGCTTGCTAAAGCGAGTGGTAGTAATCCACCAGCATTCCCACCTAAGTTTGTGCATGTGGATAATTTTGGTGCTAAGGGTGATGGTTCTGATGATTCTCAGATTTACGGAAAAATCAAAGCGTCTACTCAAATATCAGACTACAAGAATGATCAACGACACTGGATTGTATTTGAAAATATTCAAAATTTGGAGGTTGATGGTGGCGGTAGTGGAACTATTGATGGTCGCGGAAGAATATGGTGGCAAAACTCTTGTAAAATCGACGAAAGCAAACCTTGCATTGGTGCACCAACGGCATTGACATTTTCGGATTGCAATAATTTGGGAGTTAGTAGACTGAGGATAGAGAATGCTCAACAAATGCACCTTACCTTTGAAAAGTGTGTGAATGTTAGAGCTTCCCTTCTCACTGTAATTTCACCTGCTAATAGCCCCAACACTGATGGAATCCACATCACCTCTACCCAAAATATTCAAATCTTCAACTCTCTCGTTGGAACAGGTGATGATTGTGTTTCTATAGTGAGTGGGTCAAGAAATGTCCGAATCACTGATATAACCTGCGGACCTGGCCATGGGATCAGCATTGGAAGCTTAGGGAAAAATAAGTCGGAGGACCAAGTCTCAAATGTAATAGTGGACAGAGCTAAAATTTCAGGAACCACTAATGGATTGAGAATAAAAAGTTGGCAGGGAGGATCTGGCTATGCAAAGAATATTATGTTTAAAAATGTAATGATGCACAATGTTACCAATCCTATTATCATTGATCAGAACTACTGTGATCAAAAGGAATCTTGCCCAGAACAGTACTCAGCAGTGCAAGTGGAGAACATAGTGTACAAGAACATAAAAGGAAGCAGTGCCTCAGAAGTGGCCATAAAGTTTGACTGTAGCGACAGTTTTCCATGTAAGGGCATTTTGGTCCAAGATGTTAATTTATATCATCTCCAAAAAGGTCATACTGACACTAGTAGTGGTGGTAGAAGTGGACAACAAGATGTGGAAGCTTCATGCAGCAGTGTTTGGCTAACAACTAAAGGCAGAGTTTCACCACTTTGCTCTTAATTAAAATTAATTCAATTTACCTAGCTATATATATTAATTAATTAATACTAG

Network for GWHGAAZE031690

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00295.18	Glyco_hydro_28	105	388	4.80E-91

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01184	E3.2.1.15	Metabolic pathways	map01100
K01184	E3.2.1.15	Pentose and glucuronate interconversions	map00040

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004650	molecular_function	polygalacturonase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.123
	SRR3591710	White floral bud	0.059
	SRR3591711	White flower	7.226
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	8.033
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.784
	SRR8316907	Gold flowering stage	2.986
	SRR8316908	Gold flowering stage	3.147
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.050
	CNS0095596	Whole white alabastrum(diploid) 3	0.002
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.261
	CNS0095600	Silvery flower (diploied) 3	0.482
	CNS0095601	Golden flower (diploid) 1	0.636
	CNS0095602	Golden flower (diploid) 2	2.481
	CNS0095603	Golden flower (diploid) 3	3.107
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	1.150
	CNS0095611	Silvery flower (tetraploid) 2	0.401
	CNS0095612	Silvery flower (tetraploid) 3	0.694
	CNS0095613	Golden flower (tetraploid) 1	2.566
	CNS0095614	Golden flower (tetraploid) 2	10.276
	CNS0095615	Golden flower (tetraploid) 3	3.467
CRA001975	CRR073297	Stem 1	0.003
	CRR073298	Stem 2	0.002
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.001
	CRR073310	Second white 2	0.002
	CRR073311	Second white 3	0.479
	CRR073312	Silver flowering 1	4.469
	CRR073313	Silver flowering 2	6.368
	CRR073314	Silver flowering 3	5.970
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	4.347
	CRR073319	Tawny withering 2	2.637
	CRR073320	Tawny withering 3	5.945