Gene detail

Detail information of GWHGAAZE031693

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011087900.1	0	PREDICTED: protein OBERON 4 [Sesamum indicum]
Swissprot	tr\|Q84TI3\|OBE4_ARATH	0	Protein OBERON 4
trEMBL	tr\|M1A9A4\|M1A9A4_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400017678}
TAIR10	AT3G63500.2	4E-151	Protein of unknown function (DUF1423)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	63430538	63435662	-
GWHAAZE00000009	mRNA	63430538	63435662	-
GWHAAZE00000009	exon	63432671	63435662	-
GWHAAZE00000009	exon	63432114	63432278	-
GWHAAZE00000009	exon	63430538	63431198	-
GWHAAZE00000009	CDS	63432671	63435662	-
GWHAAZE00000009	CDS	63432114	63432278	-
GWHAAZE00000009	CDS	63430630	63431198	-
GWHAAZE00000009	three_prime_UTR	63430538	63430629	-

Transcript Sequence
>GWHTAAZE031731 ATGAAGAGATTGAAGTCTAGTGATGATCTTGAAACGTATGGAGAGAAGGGTGTTAGTAAAGATTGGGGAAGAAGGGATGATGATTCTAGTTTGCATCGTTCTTCGTCTCATAGGGGCTTCTATTACAAGCCTGAAAACGGCAAAAAGGGCTTGTCCTCCTCTTCTTCCTCGAGATATGATCGTTTAGAAGATGACCGCGAGAGTTCAAGATCGAGTAGGAAGCGACCTGATTATGATGTAGAGAGTTATGATCGGAGAAAGGGCTATGACCGGTACAGAGATGGCGGTGAAAGGGGGATTTTGAGCTCCTCGCCACGCGGTGGATATGGATTGGATCGGATTCATCGGTCGGAAAGCTTTTCCGGGTCTCGGAGAGATTTTCCAAAGGGGTTTAGATCGGAGAGGGACCGGTCCCGGCGAGAGGGGAGTGTTTCGTCGTGGTGGAGGTTTGGTGTAGGGAAAGATGCAGCTGATGAAGGTACTAAAACCGGTGGTGATTCAGCTAAAGGAAGTAGAGTGACAATAGATGAAATTGGAAAAGTGCTGTCCCCACGGCTTCTGAGAGATGCAAAGTCACCAGCTTGGTCAAGGGATTCTGGAAGTAGAGATGCAAAATCACCGGCTTGGTCAAAGGATTCTGGAAGTAGAGATGCGAAATCACCGGCCTGGTCAAAGGATTCTGGAAGTAGAGATGCGAAATCACCGGCTTGGTCGAAGGATTCTGGAAGTGACCAATCGAAGAGTGTTGAAGTGAAGAAGAGTGAGGACTTGCAGGTAGAGAGTGGAAGTAGCAGTGAAATGGAAGAAGGGGAGTTGGAGCCCGAGCCTGAGCCCGAGCCTGAACCTGAACCGGCTCATGTACTCGAGCCTGTAGCTGAAAATCAAGCTCCTGTTCGCTTGAATTCCGATCAGAAAGAGCTTGATAATGAGAATCCTGTTGAGCAGGTACAACTCAAAGAGTGTGTTTCTGAGGAGAAAGCTGAAGTTGGACAACCGGAAACTGTTCAAGATGTTGTGAAGGAAGTTGATGAGTTACCCCCTTGCAAAAACACATCAATCAATCTGGCAATTGAGAGTCAAGATGTAATCGAAACAACAGCTACTGCTAATGATGGTGTGAAGGATAAAGAACGCTCCTCGGAGAGTAGTGAAGCTAAGGAGGATGTGAACAATGCATTGGGACCTGCAAACGAGGAGCAAAAGGAAGACAAGGGTACTACAAATCTTGAAGTCAAAGCAGAGAATCTTGATTTGCCTTTACCAGATAAGGGAGTTGCAGGGGGAGACAGTACCTCCGTGGTCGCTTTATCACTTTTAACTGATGAAATAACCCAAAACTTCAAGGACAAGGGCAAAAGTGTGGCTGTTTCACCTAACCGTACTGATTTTGCTGAGGATGGTTTTAGGGTTCGAGGTGAAGAAGATGTAGAGGGACCAAGTACAAGGGGGTTTGAACTGTTCTTCATGGACCCTGTTAAAAAGCAAGAGAAAGCAAGCCAATCCAGTCTTAGTAAACCTAAAGATGAAAAGCTAACGCTTGAACCACTCGAGCTCTCACTTAGCTTACCAAATGTTTTATTGCCTATTGGGTCCCAAAATGCTGTTCAAGGTCCCAGTTCACCTAGCCATGCTAGGAGTGTTCAGTCTTTTGCTAGCAGTTTCCGTACAAATTCAGATGGATTTACGGCCTCAATGTCCTTCTCGGGTTCTCATCCCTTTAGCCACAACCCTAGCTGCTCTTTAACGCAAAATGAAGTTGACTATGAAAAATCAGTTGGGAGTCGGCCCATATTTCAGGGATTGGACCAATCAACTCCTTCCACCTGGCAGGCTCAGCCTTCAAATGACCGCAAGAACAAAGAAGTCCCCATGTATCAAAGGGTGCTATCGAACGGGCATGGCTCTTTTCAAGGTATTCCAAATGGTCAATCTCCGGTTCTTAAAATTGTAGAAGGAAGCTCTCGAATACCTATTGGACTCGATCGGCAGATGAGTTTTAGGCAACAAAATGAGTCCCCTGCACATAGCAGCGGGTCCCAAGAAACCGGATCGGAATATAGTAAAGACAAGAAGAGGGTAACAAGAGAGAAAAACGGCGTTAGTAGTTTGCATAGGACCAGTAACCAAGATGAGAAGGACCAACCGTTAACTGGTGGAGCTGATTTTGTCGAGCCGGTCATTACAATGCTAGATTCTGAACCGCTACATGTAACAGCTCGAAGGTTTAATGAAATGACCACGCAATCTATAGCTTGCCTTAAAGAATCTGTTAGAGACATCATTTTAAACCCAAGAAAACGGTGGCAACTATCCGCTTTTCAAAAAACGCTGCAAAATCGGTCTGACATTACCATGGAGATGCTACTAAAGTCTCACCGGGCTCAATTAGAAATCTTGGTGGCCTTGAAAACTGGTCTTCAAGAATTTCTTCACCGAAACTATGAGATATCCTCTTCCGATTTGGCGGAGATTTTTCTCAACCAACGGTGTAGGAATCTCACTTGTAAGAACCTTTTGCCCGTTGACGAATGCGATTGCAAAGTTTGTTCTCAAAAGAATGGTTTTTGCAGCGCTTGCATGTGCCTTGTATGTTCAAAATTCGACATGGCCTCTAATACATGTAGTTGGGTTGGATGTGATGTGTGTCTTCATTGGTGTCATGCTGATTGTGGGTTAAGGGAATCTTTTATCAGAAATGGTCATAGTGCAAGTGGGGGAGCCCAAGGTACAACCGAAATGCAGTTCCATTGTGTTGCTTGTGATCATCCTTCTGAGATGTTTGGCTTTGTGAAGGAAGTTTTTCAAAATTTCGCAGAGGGATGGAATGCAGAAACGTTTTTCAAGGAACTTGAATATGTGAGAAAAATTTTCTGTGCCAGTGAAGATGTTAGAGGAAAACGTATGCATGAAATAGCCATTCGCATGTTGTCAAGATTGGGAAAGAAGTGTGACCTTCAAGAAGTTCAAAGTCATATTATGGGTTTCCTTACTGGCCACTTCAGCTGCTATTATCAGAGTTTAGGGTCTATGAAAAAGGGTTTGGAGAGCCACACCAGATTTGAAGGCTTCAATAGTGTCTTCAAATCTCCATATAGCTCTTCAAGTTTTGAGGAGACAGGGAGACCAACTCTCACTCTTCTGGTGTCAAAAGGACAAAAAAGTGATTCCTTCAAATCTGGCAACACCCCAATTGTGTCTGCTAAAGAACTACCCAAAAAGCACACCGAAAAACCGATAAATATCATTGGTGGGTCCAGCCAAGAACCCGTGTGGCTAAAATCTGTTTACTCGGAAAAGTCTCCACTACCAGAGAAACTGGTTGGTATACATCCTGGATTTGATTATGACCGGATTGACCTATCAAACTCAGATCCACAACGTAGCGCTAAAAAGGAACCAGTTTTCGACGAATTGGAGAGCATTGTGAGGATCAAACATGCAGAAGCAAAAATGTTCCAAGCCCGAGCTGATGATGCAAGAAGAGAAGCTGAAGGGCTAAGACGAATAGCTCTAACAAAAAATGAGAAGATCGAAGAAGAGTATGTGGGTCGGATTAAAAAGCTGCATTTGGCCGAGGCCGAGGAGATTCGAAGACGAAAACTCGAAGAACTCACAAATTTGGAAAGAGCTCATCAAGAATATTTCAATATGAGAACGAGAATGGAAGCTGATATCAAAGATCTGTTGTTAAAAATGGAAGTGACGAAGCGGAATTTGGCCTCATGATTGGTGCATTTGATAAGAATACAAGGAATCGGGTGGTTTGGTCGGTTTAGATGAACTGGGTTTTGTATGTGATGTATTTGGGTCGGGTTTTG

Network for GWHGAAZE031693

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07227.12	PHD_Oberon	830	954	1.00E-37
PF16312.6	Oberon_cc	1128	1229	2.30E-37

Protein Sequence

>GWHPAAZE031713
MKRLKSSDDLETYGEKGVSKDWGRRDDDSSLHRSSSHRGFYYKPENGKKGLSSSSSSRYDRLEDDRESSRSSRKRPDYDVESYDRRKGYDRYRDGGERGILSSSPRGGYGLDRIHRSESFSGSRRDFPKGFRSERDRSRREGSVSSWWRFGVGKDAADEGTKTGGDSAKGSRVTIDEIGKVLSPRLLRDAKSPAWSRDSGSRDAKSPAWSKDSGSRDAKSPAWSKDSGSRDAKSPAWSKDSGSDQSKSVEVKKSEDLQVESGSSSEMEEGELEPEPEPEPEPEPAHVLEPVAENQAPVRLNSDQKELDNENPVEQVQLKECVSEEKAEVGQPETVQDVVKEVDELPPCKNTSINLAIESQDVIETTATANDGVKDKERSSESSEAKEDVNNALGPANEEQKEDKGTTNLEVKAENLDLPLPDKGVAGGDSTSVVALSLLTDEITQNFKDKGKSVAVSPNRTDFAEDGFRVRGEEDVEGPSTRGFELFFMDPVKKQEKASQSSLSKPKDEKLTLEPLELSLSLPNVLLPIGSQNAVQGPSSPSHARSVQSFASSFRTNSDGFTASMSFSGSHPFSHNPSCSLTQNEVDYEKSVGSRPIFQGLDQSTPSTWQAQPSNDRKNKEVPMYQRVLSNGHGSFQGIPNGQSPVLKIVEGSSRIPIGLDRQMSFRQQNESPAHSSGSQETGSEYSKDKKRVTREKNGVSSLHRTSNQDEKDQPLTGGADFVEPVITMLDSEPLHVTARRFNEMTTQSIACLKESVRDIILNPRKRWQLSAFQKTLQNRSDITMEMLLKSHRAQLEILVALKTGLQEFLHRNYEISSSDLAEIFLNQRCRNLTCKNLLPVDECDCKVCSQKNGFCSACMCLVCSKFDMASNTCSWVGCDVCLHWCHADCGLRESFIRNGHSASGGAQGTTEMQFHCVACDHPSEMFGFVKEVFQNFAEGWNAETFFKELEYVRKIFCASEDVRGKRMHEIAIRMLSRLGKKCDLQEVQSHIMGFLTGHFSCYYQSLGSMKKGLESHTRFEGFNSVFKSPYSSSSFEETGRPTLTLLVSKGQKSDSFKSGNTPIVSAKELPKKHTEKPINIIGGSSQEPVWLKSVYSEKSPLPEKLVGIHPGFDYDRIDLSNSDPQRSAKKEPVFDELESIVRIKHAEAKMFQARADDARREAEGLRRIALTKNEKIEEEYVGRIKKLHLAEAEEIRRRKLEELTNLERAHQEYFNMRTRMEADIKDLLLKMEVTKRNLAS

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.098
	SRR3591706	second leaf	9.453
	SRR3591707	mature leaf	14.630
	SRR3591708	Shoot apex	17.360
	SRR3591709	Stem	21.326
	SRR3591710	White floral bud	20.935
	SRR3591711	White flower	32.099
	SRR3591712	Green floral bud	14.682
	SRR3591713	Yellow flower	22.387
SRP173429	SRR8316895	Juvenile bud stage	10.471
	SRR8316896	Juvenile bud stage	12.094
	SRR8316897	Juvenile bud stage	6.357
	SRR8316894	Third green stage	6.183
	SRR8316900	Third green stage	12.654
	SRR8316901	Third green stage	12.296
	SRR8316898	Complete white stage	4.787
	SRR8316899	Complete white stage	17.810
	SRR8316903	Complete white stage	15.191
	SRR8316902	Silver flowering stage	9.692
	SRR8316904	Silver flowering stage	14.680
	SRR8316905	Silver flowering stage	6.796
	SRR8316906	Gold flowering stage	19.523
	SRR8316907	Gold flowering stage	17.250
	SRR8316908	Gold flowering stage	21.284
SRP132670	SRR6706286	Control	11.927
	SRR6706287	Light intensity 50%	11.958
	SRR6706288	Light intensity 20%	12.442
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.318
	CNS0095593	Slightly white alabastrum(diploid) 2	9.197
	CNS0095594	Slightly white alabastrum(diploid) 3	9.780
	CNS0095595	Whole white alabastrum(diploid) 2	7.785
	CNS0095596	Whole white alabastrum(diploid) 3	4.847
	CNS0095597	Whole white alabastrum(diploid) 4	7.697
	CNS0095598	Silvery flower (diploied) 1	22.879
	CNS0095599	Silvery flower (diploied) 2	15.115
	CNS0095600	Silvery flower (diploied) 3	29.755
	CNS0095601	Golden flower (diploid) 1	17.749
	CNS0095602	Golden flower (diploid) 2	33.644
	CNS0095603	Golden flower (diploid) 3	29.935
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.287
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.861
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.999
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.789
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.230
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.431
	CNS0095610	Silvery flower (tetraploid) 1	30.589
	CNS0095611	Silvery flower (tetraploid) 2	27.585
	CNS0095612	Silvery flower (tetraploid) 3	30.795
	CNS0095613	Golden flower (tetraploid) 1	19.138
	CNS0095614	Golden flower (tetraploid) 2	27.174
	CNS0095615	Golden flower (tetraploid) 3	36.732
CRA001975	CRR073297	Stem 1	21.186
	CRR073298	Stem 2	19.479
	CRR073299	Stem 3	16.397
	CRR073300	Leaf 1	20.849
	CRR073301	Leaf 2	17.679
	CRR073302	Leaf 3	13.618
	CRR073303	Juvenile bud 1	16.738
	CRR073304	Juvenile bud 2	13.858
	CRR073305	Juvenile bud 3	21.935
	CRR073306	Third green 1	15.608
	CRR073307	Third green 2	11.704
	CRR073308	Third green 3	18.076
	CRR073309	Second white 1	8.878
	CRR073310	Second white 2	22.079
	CRR073311	Second white 3	20.513
	CRR073312	Silver flowering 1	15.530
	CRR073313	Silver flowering 2	13.313
	CRR073314	Silver flowering 3	13.619
	CRR073315	Gold flowering 1	10.919
	CRR073316	Gold flowering 2	18.618
	CRR073317	Gold flowering 3	6.657
	CRR073318	Tawny withering 1	17.675
	CRR073319	Tawny withering 2	18.384
	CRR073320	Tawny withering 3	18.992