Gene detail

Detail information of GWHGAAZE031712

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009758572.1	2.0714E-144	PREDICTED: polyamine oxidase 1 isoform X2 [Nicotiana sylvestris]
COG	YP_007109585.1	1E-20	amine oxidase
Swissprot	tr\|Q9FNA2\|PAO1_ARATH	6E-108	Polyamine oxidase 1
trEMBL	tr\|Q4H439\|Q4H439_TOBAC	8E-144	Polyamine oxidase {ECO:0000313\|EMBL:BAE16174.1}
TAIR10	AT5G13700.1	2E-86	polyamine oxidase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	63911807	63916965	+
GWHAAZE00000009	mRNA	63911807	63916965	+
GWHAAZE00000009	exon	63911807	63911965	+
GWHAAZE00000009	exon	63915300	63915554	+
GWHAAZE00000009	exon	63916152	63916233	+
GWHAAZE00000009	exon	63916763	63916965	+
GWHAAZE00000009	CDS	63911807	63911965	+
GWHAAZE00000009	CDS	63915300	63915554	+
GWHAAZE00000009	CDS	63916152	63916233	+
GWHAAZE00000009	CDS	63916763	63916965	+

Transcript Sequence
>GWHTAAZE031750 ATGAAACAGAGGTGGAAAATGGAGGCTATCGAGAAGTGTGACGTAATGGTGTACACAAAGATCTTCTTGAAGTTTCCGTGTAAATTCTGGCCTTGTGGGGCCGAAAAGGAGTTTTTTATCTACGCCCACGAGCGGAGAGGATACTACACATTTTGGCAGCATATGGAAAATGCATACCCTGGTTCCAATATTCTGGTTGTGACATTGACAAACGGAGAATCAAAGCGAGTAGAAGCTCAATCGGACCAAGAAACCTTAAAAGAAGCTATGGAGGTTCTGAAGAACATGTTTGGACCTCAAATACCGGATGCCACTGATATACTTGTGCCTCGATGGTGGAATAACCGGTTCCAGCGCGGCAGCTACAGCAACTACCCTATCTATATCAATCATCAAGCCGTTCAGGATATTAAGGCACCAGTAGGACGGATTTTCTTCACCGGAGAGCACACAAGCGAGAGATTTAACGGCTATGTCCATGGTGGATACCTTGCAGGTATTGACACAAGCGAAGCCATATTGAAAGATATGAGAAACGAGGAGGAAAGAAAAAGCGAGAGCCAAGCTTTTCTACTCGAGCCCTTGCTGACGCTAACCTTGACACAAACGGACGCCGTATCTGGTCTACACAAATGCGATATTCCTAGACAACTTTTCCTCAGTAGTAACAAGCTAGGCCTACCTGAGGCCATCTTATGA

Network for GWHGAAZE031712

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01593.25	Amino_oxidase	3	174	6.90E-32

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13366	MPAO, PAO1	Metabolic pathways	map01100
		Arginine and proline metabolism	map00330
		beta-Alanine metabolism	map00410

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.139
	SRR3591706	second leaf	1.769
	SRR3591707	mature leaf	3.142
	SRR3591708	Shoot apex	3.697
	SRR3591709	Stem	3.916
	SRR3591710	White floral bud	15.349
	SRR3591711	White flower	8.888
	SRR3591712	Green floral bud	34.939
	SRR3591713	Yellow flower	4.827
SRP173429	SRR8316895	Juvenile bud stage	6.391
	SRR8316896	Juvenile bud stage	33.872
	SRR8316897	Juvenile bud stage	10.967
	SRR8316894	Third green stage	10.080
	SRR8316900	Third green stage	24.961
	SRR8316901	Third green stage	25.637
	SRR8316898	Complete white stage	9.796
	SRR8316899	Complete white stage	12.508
	SRR8316903	Complete white stage	13.435
	SRR8316902	Silver flowering stage	9.263
	SRR8316904	Silver flowering stage	9.824
	SRR8316905	Silver flowering stage	3.245
	SRR8316906	Gold flowering stage	9.806
	SRR8316907	Gold flowering stage	16.281
	SRR8316908	Gold flowering stage	6.240
SRP132670	SRR6706286	Control	43.224
	SRR6706287	Light intensity 50%	37.356
	SRR6706288	Light intensity 20%	36.426
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.830
	CNS0095593	Slightly white alabastrum(diploid) 2	10.150
	CNS0095594	Slightly white alabastrum(diploid) 3	20.813
	CNS0095595	Whole white alabastrum(diploid) 2	10.971
	CNS0095596	Whole white alabastrum(diploid) 3	14.843
	CNS0095597	Whole white alabastrum(diploid) 4	18.115
	CNS0095598	Silvery flower (diploied) 1	6.773
	CNS0095599	Silvery flower (diploied) 2	6.688
	CNS0095600	Silvery flower (diploied) 3	27.044
	CNS0095601	Golden flower (diploid) 1	5.216
	CNS0095602	Golden flower (diploid) 2	15.612
	CNS0095603	Golden flower (diploid) 3	15.664
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.375
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.784
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.986
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.568
	CNS0095608	Whole white alabastrum(tetraploid) 2	27.680
	CNS0095609	Whole white alabastrum(tetraploid) 3	25.275
	CNS0095610	Silvery flower (tetraploid) 1	14.516
	CNS0095611	Silvery flower (tetraploid) 2	11.620
	CNS0095612	Silvery flower (tetraploid) 3	17.832
	CNS0095613	Golden flower (tetraploid) 1	33.136
	CNS0095614	Golden flower (tetraploid) 2	14.891
	CNS0095615	Golden flower (tetraploid) 3	6.370
CRA001975	CRR073297	Stem 1	13.045
	CRR073298	Stem 2	20.368
	CRR073299	Stem 3	16.673
	CRR073300	Leaf 1	11.343
	CRR073301	Leaf 2	11.967
	CRR073302	Leaf 3	10.424
	CRR073303	Juvenile bud 1	11.875
	CRR073304	Juvenile bud 2	9.713
	CRR073305	Juvenile bud 3	9.462
	CRR073306	Third green 1	24.751
	CRR073307	Third green 2	28.706
	CRR073308	Third green 3	30.920
	CRR073309	Second white 1	22.611
	CRR073310	Second white 2	24.969
	CRR073311	Second white 3	30.902
	CRR073312	Silver flowering 1	61.430
	CRR073313	Silver flowering 2	54.241
	CRR073314	Silver flowering 3	48.641
	CRR073315	Gold flowering 1	4.940
	CRR073316	Gold flowering 2	17.398
	CRR073317	Gold flowering 3	9.166
	CRR073318	Tawny withering 1	20.965
	CRR073319	Tawny withering 2	60.386
	CRR073320	Tawny withering 3	21.999