Detail information of GWHGAAZE031736


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010269715.12.2613E-67PREDICTED: structure-specific endonuclease subunit SLX1 [Nelumbo nucifera]
COGYP_391372.12E-10excinuclease ABC subunit C
trEMBLtr|D7TDM6|D7TDM6_VITVI9E-65Putative uncharacterized protein {ECO:0000313|EMBL:CBI28599.3}
TAIR10AT5G43210.15E-41Excinuclease ABC, C subunit, N-terminal

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene6425116364256005+
GWHAAZE00000009mRNA6425116364256005+
GWHAAZE00000009exon6425116364251248+
GWHAAZE00000009exon6425510564255211+
GWHAAZE00000009exon6425581264256005+
GWHAAZE00000009CDS6425116364251248+
GWHAAZE00000009CDS6425510564255211+
GWHAAZE00000009CDS6425581264256005+
Transcript Sequence

Network for GWHGAAZE031736

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01541.25GIY-YIG4782.60E-13
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K15078SLX1 Fanconi anemia pathway map03460

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf14.661
SRR3591706second leaf9.993
SRR3591707mature leaf20.484
SRR3591708Shoot apex14.780
SRR3591709Stem25.553
SRR3591710White floral bud30.657
SRR3591711White flower33.877
SRR3591712Green floral bud37.670
SRR3591713Yellow flower33.490
SRP173429 SRR8316895Juvenile bud stage 6.628
SRR8316896Juvenile bud stage 12.705
SRR8316897Juvenile bud stage 7.163
SRR8316894Third green stage 5.921
SRR8316900Third green stage 20.157
SRR8316901Third green stage 20.670
SRR8316898Complete white stage 9.628
SRR8316899Complete white stage 19.279
SRR8316903Complete white stage 17.883
SRR8316902Silver flowering stage11.868
SRR8316904Silver flowering stage11.611
SRR8316905Silver flowering stage7.785
SRR8316906Gold flowering stage 22.763
SRR8316907Gold flowering stage 23.482
SRR8316908Gold flowering stage 18.589
SRP132670SRR6706286Control26.153
SRR6706287Light intensity 50%21.944
SRR6706288Light intensity 20%24.522
CNP0000432CNS0095592Slightly white alabastrum(diploid) 118.835
CNS0095593Slightly white alabastrum(diploid) 212.187
CNS0095594Slightly white alabastrum(diploid) 315.093
CNS0095595Whole white alabastrum(diploid) 223.210
CNS0095596Whole white alabastrum(diploid) 324.064
CNS0095597Whole white alabastrum(diploid) 422.835
CNS0095598Silvery flower (diploied) 117.554
CNS0095599Silvery flower (diploied) 214.129
CNS0095600Silvery flower (diploied) 319.814
CNS0095601Golden flower (diploid) 111.931
CNS0095602Golden flower (diploid) 220.910
CNS0095603Golden flower (diploid) 314.059
CNS0095604Slightly white alabastrum(tetraploid) 117.526
CNS0095605Slightly white alabastrum(tetraploid) 216.891
CNS0095606Slightly white alabastrum(tetraploid) 313.497
CNS0095607Whole white alabastrum(tetraploid) 120.141
CNS0095608Whole white alabastrum(tetraploid) 224.562
CNS0095609Whole white alabastrum(tetraploid) 319.516
CNS0095610Silvery flower (tetraploid) 122.220
CNS0095611Silvery flower (tetraploid) 223.137
CNS0095612Silvery flower (tetraploid) 318.516
CNS0095613Golden flower (tetraploid) 118.207
CNS0095614Golden flower (tetraploid) 217.773
CNS0095615Golden flower (tetraploid) 315.863
CRA001975CRR073297Stem 16.546
CRR073298Stem 28.614
CRR073299Stem 39.172
CRR073300Leaf 113.296
CRR073301Leaf 29.107
CRR073302Leaf 38.636
CRR073303Juvenile bud 114.559
CRR073304Juvenile bud 211.815
CRR073305Juvenile bud 310.529
CRR073306Third green 111.744
CRR073307Third green 29.491
CRR073308Third green 39.645
CRR073309Second white 15.793
CRR073310Second white 27.995
CRR073311Second white 35.998
CRR073312Silver flowering 15.795
CRR073313Silver flowering 22.084
CRR073314Silver flowering 34.400
CRR073315Gold flowering 110.673
CRR073316Gold flowering 212.343
CRR073317Gold flowering 38.594
CRR073318Tawny withering 19.079
CRR073319Tawny withering 25.011
CRR073320Tawny withering 312.029