Gene detail

Detail information of GWHGAAZE031749

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007008757.1	0	Cytokinin oxidase/dehydrogenase 6 isoform 1 [Theobroma cacao]
COG	YP_007093170.1	4E-49	FAD linked oxidase domain-containing protein
Swissprot	tr\|Q9LY71\|CKX6_ARATH	4E-165	Cytokinin dehydrogenase 6 (Precursor)
trEMBL	tr\|A0A061FLK6\|A0A061FLK6_THECC	0	Cytokinin oxidase/dehydrogenase 6 isoform 1 {ECO:0000313\|EMBL:EOY17567.1}
TAIR10	AT3G63440.1	1E-134	cytokinin oxidase/dehydrogenase 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	64474656	64476084	-
GWHAAZE00000009	mRNA	64474656	64476084	-
GWHAAZE00000009	exon	64474656	64474946	-
GWHAAZE00000009	exon	64475229	64475356	-
GWHAAZE00000009	exon	64475466	64476084	-
GWHAAZE00000009	CDS	64475466	64476084	-
GWHAAZE00000009	CDS	64475229	64475356	-
GWHAAZE00000009	CDS	64474656	64474946	-

Transcript Sequence
>GWHTAAZE031787 ATGAGATACCCATCTTTCAATTTCCTCAGACAAACAAACATTATTTTCCTAAGAAGCATTATGATCATGCTGATTACCTTTCTAGCCATTAAACTAAACCTCTGTTTCTCTACCATCCCCTCTTCATTGAAAACACTTCCACTCAACGGGCATTTCAGTTTCCACGGAAACGAATTTGCCTCCAAAGACTTTGGAAACCGGTTCCATTTCCACCCACTAGCAGTCCTACACCCAAATTCAGTTTCCGACATTTCCACCACAATAAGGCATGTGTGGCAAATGGGACCCGGCTCAGAGCTCACCGTTGCAGCCAGAGGCCACGGTCACTCGCTCCAAGGCCAGTCCCAGGCTCACCGGGGTGTAGTCATCAATATGGAGTCCCTAAAAGAACAGGAAATGCGGGTCCACAGTGGAAAATTCCCTTATGTGGATGTTTCTGGGGGTGAATTATGGATAAATATTTTACATGAAAGCCTTAAGTATGGGTTAGCACCCAAATCTTGGACCGATTATTTACATCTAACGGTTGGGGGTACTTTGTCTAATGCGGGCATAAGTGGGCAGGCTTTTCGGCACGGACCTCAGATCAGTAACGTCCACCAACTTGAGGTCGTTACAGGTAAAGGGGAGGTGATTAATTGTTCGGACCAACAAAATGCGGACTTGTTTCATGGTGTTCTTGGTGGACTTGGACAGTTTGGGATAATAACGCGCGCAAGAATCTCTCTCGAACCTGCACCAAAAATGGTAAAATGGATCAGAGTGTTGTACGAGGATTTTTCCACATTTGCAAGTGACCAGGAACGTTTAATATCTGCAGAGAACACATTTGATTATATAGAAGGGTTAGTAATAAAGAACAGAACAGGGATTCTAAACAACTGGAGAGCCTCCTTCAACCCACAAGACTCGGTGCAAGCTAGCCAGTTCAATTCCGAAGGCAAAATGCTCTTTTGTCTCGAATTAGCAAAACACTTTAACCCAGAAAATGTCGACACAACTAACCAGGTGAGGCTTGCCGCAACCCATTATTCTTGA

Network for GWHGAAZE031749

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01565.24	FAD_binding_4	72	215	7.70E-19
PF09265.11	Cytokin-bind	247	337	6.70E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00279	CKX	Zeatin biosynthesis	map00908

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0009690	biological_process	cytokinin metabolic process
GO:0016491	molecular_function	oxidoreductase activity
GO:0050660	molecular_function	flavin adenine dinucleotide binding
GO:0071949	molecular_function	FAD binding
GO:0019139	molecular_function	cytokinin dehydrogenase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.967
	SRR3591706	second leaf	1.058
	SRR3591707	mature leaf	1.871
	SRR3591708	Shoot apex	1.752
	SRR3591709	Stem	2.498
	SRR3591710	White floral bud	1.895
	SRR3591711	White flower	75.880
	SRR3591712	Green floral bud	0.608
	SRR3591713	Yellow flower	189.282
SRP173429	SRR8316895	Juvenile bud stage	0.556
	SRR8316896	Juvenile bud stage	0.229
	SRR8316897	Juvenile bud stage	0.140
	SRR8316894	Third green stage	1.478
	SRR8316900	Third green stage	0.255
	SRR8316901	Third green stage	0.536
	SRR8316898	Complete white stage	0.098
	SRR8316899	Complete white stage	0.625
	SRR8316903	Complete white stage	0.867
	SRR8316902	Silver flowering stage	13.457
	SRR8316904	Silver flowering stage	20.785
	SRR8316905	Silver flowering stage	12.083
	SRR8316906	Gold flowering stage	144.521
	SRR8316907	Gold flowering stage	83.817
	SRR8316908	Gold flowering stage	163.328
SRP132670	SRR6706286	Control	1.302
	SRR6706287	Light intensity 50%	1.071
	SRR6706288	Light intensity 20%	0.688
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.050
	CNS0095593	Slightly white alabastrum(diploid) 2	0.432
	CNS0095594	Slightly white alabastrum(diploid) 3	1.333
	CNS0095595	Whole white alabastrum(diploid) 2	0.771
	CNS0095596	Whole white alabastrum(diploid) 3	0.513
	CNS0095597	Whole white alabastrum(diploid) 4	0.102
	CNS0095598	Silvery flower (diploied) 1	4.802
	CNS0095599	Silvery flower (diploied) 2	4.963
	CNS0095600	Silvery flower (diploied) 3	29.176
	CNS0095601	Golden flower (diploid) 1	5.560
	CNS0095602	Golden flower (diploid) 2	101.327
	CNS0095603	Golden flower (diploid) 3	99.452
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.327
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.201
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.551
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.312
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.330
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.155
	CNS0095610	Silvery flower (tetraploid) 1	13.715
	CNS0095611	Silvery flower (tetraploid) 2	4.181
	CNS0095612	Silvery flower (tetraploid) 3	7.878
	CNS0095613	Golden flower (tetraploid) 1	21.928
	CNS0095614	Golden flower (tetraploid) 2	22.363
	CNS0095615	Golden flower (tetraploid) 3	82.019
CRA001975	CRR073297	Stem 1	1.447
	CRR073298	Stem 2	0.924
	CRR073299	Stem 3	0.450
	CRR073300	Leaf 1	0.261
	CRR073301	Leaf 2	0.690
	CRR073302	Leaf 3	0.118
	CRR073303	Juvenile bud 1	0.036
	CRR073304	Juvenile bud 2	0.108
	CRR073305	Juvenile bud 3	0.044
	CRR073306	Third green 1	1.232
	CRR073307	Third green 2	0.734
	CRR073308	Third green 3	0.711
	CRR073309	Second white 1	18.847
	CRR073310	Second white 2	23.058
	CRR073311	Second white 3	30.728
	CRR073312	Silver flowering 1	129.725
	CRR073313	Silver flowering 2	111.836
	CRR073314	Silver flowering 3	123.729
	CRR073315	Gold flowering 1	0.787
	CRR073316	Gold flowering 2	1.252
	CRR073317	Gold flowering 3	0.340
	CRR073318	Tawny withering 1	0.985
	CRR073319	Tawny withering 2	0.356
	CRR073320	Tawny withering 3	0.732