Gene detail

Detail information of GWHGAAZE031759

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010645695.1	1.008E-99	PREDICTED: crossover junction endonuclease MUS81 isoform X5 [Vitis vinifera]
Swissprot	tr\|Q5W9E7\|MUS81_ARATH	4E-68	Crossover junction endonuclease MUS81
trEMBL	tr\|D7SQ12\|D7SQ12_VITVI	4E-100	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI17741.3}
TAIR10	AT4G30870.1	1E-59	Restriction endonuclease, type II-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	64559896	64563202	+
GWHAAZE00000009	mRNA	64559896	64563202	+
GWHAAZE00000009	exon	64559896	64559957	+
GWHAAZE00000009	exon	64560209	64560334	+
GWHAAZE00000009	exon	64560879	64561122	+
GWHAAZE00000009	exon	64562162	64562345	+
GWHAAZE00000009	exon	64562427	64562560	+
GWHAAZE00000009	exon	64563050	64563202	+
GWHAAZE00000009	CDS	64559896	64559957	+
GWHAAZE00000009	CDS	64560209	64560334	+
GWHAAZE00000009	CDS	64560879	64561122	+
GWHAAZE00000009	CDS	64562162	64562345	+
GWHAAZE00000009	CDS	64562427	64562560	+
GWHAAZE00000009	CDS	64563050	64563202	+

Transcript Sequence
>GWHTAAZE031797 ATGCGAAAACAGGAGCTCATTGATGCAGCTGAAGCAAGTGGGCTTTCTCGAGCGCCGATTATGCCAGAAAAGGGAAAAGGGAAACCTAGTCAATTTGGAAACTCACCTAGGGAGTGGTACACCGGATGGAGCTGCATGAAGACATTGATAACTAAAGGACTTGTTGTGAAGTCAAGCAACCCTGCAAACTTAAAGTGTAGGTACATGCTGACGGATGAAGGCAAGGAAGCAGCAAGGGAATGTCTCTTGAGATCTGGATTGGATGATTCCATGGATGGTTTAGCTGCTGGTGCAGAAACATTGAATTTAGATAAAACTAACAACATATCAGGCCTGGGATATGCCTGCGCTGACTCGGTAGAAGAACTGCAACACATTGGTTCAAGCAGGCAGAAGAAATCATTTGATGTTCCACAAGAATCTCTTGATAGGGAACAAATTATCCGTGCTTTCTCCGAGGTTTCGGAAGTTTCTGGAAACAAAGATATCTCTTCACTATGGCCTGCTGTTCTATGTTGTCTTCGAGAAGAGCAGGTTTACGGTTTGCCTTTCGAGTCTCGTAATACTCAACGAGATCATCATCTCTCATCATCCGCGACTTACAGATCTAGAGACACTCAAGTTGTAGATCTTGTTATAGGCGACGATAGACCGATGAATTCATCTTGTGATGAGACATCATATATTCCAAAGTCTTCTCGTATTGATTCTACAAATAACTCTTTCACCTTGAAAGCTTGCTCATCAACTGATTATCATGTGCACAAGCTAGGTGGAGGTGGTTTTGAAACTAAATCAAACATTTTAAGTGTTCCTCCTTTGACTTTTGGGGAGAGGTTTGAGGAAGTATATGAAGTAATTTTGATATTGGATGATCGGGAGAAATTTACCTCCCAGGGGTAA

Network for GWHGAAZE031759

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08991	MUS81	Homologous recombination	map03440
K08991	MUS81	Fanconi anemia pathway	map03460

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.528
	SRR3591706	second leaf	0.879
	SRR3591707	mature leaf	0.683
	SRR3591708	Shoot apex	7.114
	SRR3591709	Stem	3.402
	SRR3591710	White floral bud	1.463
	SRR3591711	White flower	1.600
	SRR3591712	Green floral bud	1.134
	SRR3591713	Yellow flower	0.790
SRP173429	SRR8316895	Juvenile bud stage	1.845
	SRR8316896	Juvenile bud stage	2.837
	SRR8316897	Juvenile bud stage	0.995
	SRR8316894	Third green stage	0.752
	SRR8316900	Third green stage	2.277
	SRR8316901	Third green stage	1.589
	SRR8316898	Complete white stage	0.156
	SRR8316899	Complete white stage	1.268
	SRR8316903	Complete white stage	0.067
	SRR8316902	Silver flowering stage	0.197
	SRR8316904	Silver flowering stage	0.309
	SRR8316905	Silver flowering stage	0.072
	SRR8316906	Gold flowering stage	0.492
	SRR8316907	Gold flowering stage	0.990
	SRR8316908	Gold flowering stage	0.274
SRP132670	SRR6706286	Control	0.904
	SRR6706287	Light intensity 50%	1.215
	SRR6706288	Light intensity 20%	1.163
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.074
	CNS0095593	Slightly white alabastrum(diploid) 2	0.977
	CNS0095594	Slightly white alabastrum(diploid) 3	1.161
	CNS0095595	Whole white alabastrum(diploid) 2	2.089
	CNS0095596	Whole white alabastrum(diploid) 3	2.179
	CNS0095597	Whole white alabastrum(diploid) 4	1.047
	CNS0095598	Silvery flower (diploied) 1	1.169
	CNS0095599	Silvery flower (diploied) 2	1.120
	CNS0095600	Silvery flower (diploied) 3	1.196
	CNS0095601	Golden flower (diploid) 1	1.506
	CNS0095602	Golden flower (diploid) 2	0.744
	CNS0095603	Golden flower (diploid) 3	0.946
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.810
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.128
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.109
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.098
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.754
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.067
	CNS0095610	Silvery flower (tetraploid) 1	0.596
	CNS0095611	Silvery flower (tetraploid) 2	0.845
	CNS0095612	Silvery flower (tetraploid) 3	0.550
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.292
	CNS0095615	Golden flower (tetraploid) 3	0.167
CRA001975	CRR073297	Stem 1	3.055
	CRR073298	Stem 2	2.078
	CRR073299	Stem 3	1.362
	CRR073300	Leaf 1	2.295
	CRR073301	Leaf 2	2.245
	CRR073302	Leaf 3	0.389
	CRR073303	Juvenile bud 1	0.457
	CRR073304	Juvenile bud 2	0.193
	CRR073305	Juvenile bud 3	0.462
	CRR073306	Third green 1	0.401
	CRR073307	Third green 2	0.152
	CRR073308	Third green 3	0.018
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.145
	CRR073311	Second white 3	0.114
	CRR073312	Silver flowering 1	0.157
	CRR073313	Silver flowering 2	0.296
	CRR073314	Silver flowering 3	0.200
	CRR073315	Gold flowering 1	0.495
	CRR073316	Gold flowering 2	0.075
	CRR073317	Gold flowering 3	0.886
	CRR073318	Tawny withering 1	1.406
	CRR073319	Tawny withering 2	0.342
	CRR073320	Tawny withering 3	0.955