Detail information of GWHGAAZE031780


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009769231.13.92866E-70PREDICTED: protein ROOT HAIR DEFECTIVE 3-like isoform X2 [Nicotiana sylvestris]
Swissprottr|Q2QMH2|RHD31_ORYSJ2E-61Protein ROOT HAIR DEFECTIVE 3 homolog 1 {ECO:0000255|HAMAP-Rule:MF_03109}
trEMBLtr|A0A072TLJ4|A0A072TLJ4_MEDTR3E-68Protein ROOT HAIR DEFECTIVE 3 homolog {ECO:0000256|HAMAP-Rule:MF_03109}
TAIR10AT5G45160.14E-51Root hair defective 3 GTP-binding protein (RHD3)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene6477823964779553-
GWHAAZE00000009mRNA6477823964779553-
GWHAAZE00000009exon6477823964778328-
GWHAAZE00000009exon6477840864778476-
GWHAAZE00000009exon6477856164778719-
GWHAAZE00000009exon6477922664779282-
GWHAAZE00000009exon6477937664779438-
GWHAAZE00000009exon6477951264779553-
GWHAAZE00000009CDS6477951264779553-
GWHAAZE00000009CDS6477937664779438-
GWHAAZE00000009CDS6477922664779282-
GWHAAZE00000009CDS6477856164778719-
GWHAAZE00000009CDS6477840864778476-
GWHAAZE00000009CDS6477823964778328-
Transcript Sequence

Network for GWHGAAZE031780

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0029


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05879.13RHD311604.60E-56
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005525molecular_functionGTP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf38.514
SRR3591706second leaf25.564
SRR3591707mature leaf37.685
SRR3591708Shoot apex23.458
SRR3591709Stem49.617
SRR3591710White floral bud45.384
SRR3591711White flower42.294
SRR3591712Green floral bud40.147
SRR3591713Yellow flower42.512
SRP173429 SRR8316895Juvenile bud stage 15.942
SRR8316896Juvenile bud stage 21.985
SRR8316897Juvenile bud stage 10.008
SRR8316894Third green stage 7.839
SRR8316900Third green stage 30.045
SRR8316901Third green stage 31.597
SRR8316898Complete white stage 24.874
SRR8316899Complete white stage 67.182
SRR8316903Complete white stage 40.600
SRR8316902Silver flowering stage9.756
SRR8316904Silver flowering stage20.464
SRR8316905Silver flowering stage7.943
SRR8316906Gold flowering stage 31.489
SRR8316907Gold flowering stage 36.166
SRR8316908Gold flowering stage 37.601
SRP132670SRR6706286Control43.765
SRR6706287Light intensity 50%40.933
SRR6706288Light intensity 20%49.355
CNP0000432CNS0095592Slightly white alabastrum(diploid) 111.157
CNS0095593Slightly white alabastrum(diploid) 210.648
CNS0095594Slightly white alabastrum(diploid) 314.345
CNS0095595Whole white alabastrum(diploid) 214.798
CNS0095596Whole white alabastrum(diploid) 312.094
CNS0095597Whole white alabastrum(diploid) 414.721
CNS0095598Silvery flower (diploied) 124.766
CNS0095599Silvery flower (diploied) 226.643
CNS0095600Silvery flower (diploied) 344.883
CNS0095601Golden flower (diploid) 123.510
CNS0095602Golden flower (diploid) 247.387
CNS0095603Golden flower (diploid) 347.944
CNS0095604Slightly white alabastrum(tetraploid) 119.514
CNS0095605Slightly white alabastrum(tetraploid) 216.023
CNS0095606Slightly white alabastrum(tetraploid) 363.125
CNS0095607Whole white alabastrum(tetraploid) 112.651
CNS0095608Whole white alabastrum(tetraploid) 215.277
CNS0095609Whole white alabastrum(tetraploid) 350.425
CNS0095610Silvery flower (tetraploid) 147.679
CNS0095611Silvery flower (tetraploid) 235.928
CNS0095612Silvery flower (tetraploid) 329.591
CNS0095613Golden flower (tetraploid) 116.434
CNS0095614Golden flower (tetraploid) 235.422
CNS0095615Golden flower (tetraploid) 326.313
CRA001975CRR073297Stem 19.148
CRR073298Stem 28.026
CRR073299Stem 36.090
CRR073300Leaf 112.118
CRR073301Leaf 211.375
CRR073302Leaf 38.465
CRR073303Juvenile bud 19.967
CRR073304Juvenile bud 211.673
CRR073305Juvenile bud 318.431
CRR073306Third green 13.824
CRR073307Third green 22.716
CRR073308Third green 34.947
CRR073309Second white 15.669
CRR073310Second white 25.567
CRR073311Second white 33.653
CRR073312Silver flowering 13.029
CRR073313Silver flowering 22.817
CRR073314Silver flowering 32.368
CRR073315Gold flowering 16.142
CRR073316Gold flowering 27.936
CRR073317Gold flowering 37.092
CRR073318Tawny withering 111.937
CRR073319Tawny withering 27.756
CRR073320Tawny withering 38.726