Detail information of GWHGAAZE031781


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008378769.13.92445E-92PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 1-like [Malus domestica]
COGYP_007072815.10.0000002hypothetical protein Lepto7376_3822
Swissprottr|P93042|RHD3_ARATH7E-91Protein ROOT HAIR DEFECTIVE 3 {ECO:0000255|HAMAP-Rule:MF_03109}
trEMBLtr|M0S685|M0S685_MUSAM1E-95Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P08440_001}
TAIR10AT3G13870.16E-78Root hair defective 3 GTP-binding protein (RHD3)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene6477961064783307-
GWHAAZE00000009mRNA6477961064783307-
GWHAAZE00000009exon6477961064779810-
GWHAAZE00000009exon6477990864779971-
GWHAAZE00000009exon6478009664780166-
GWHAAZE00000009exon6478229664782398-
GWHAAZE00000009exon6478249264782558-
GWHAAZE00000009exon6478316064783307-
GWHAAZE00000009CDS6478316064783307-
GWHAAZE00000009CDS6478249264782558-
GWHAAZE00000009CDS6478229664782398-
GWHAAZE00000009CDS6478009664780166-
GWHAAZE00000009CDS6477990864779971-
GWHAAZE00000009CDS6477961064779810-
Transcript Sequence

Network for GWHGAAZE031781

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0029


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05879.13RHD3441875.20E-75
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005525molecular_functionGTP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf38.731
SRR3591706second leaf20.326
SRR3591707mature leaf28.587
SRR3591708Shoot apex16.244
SRR3591709Stem34.042
SRR3591710White floral bud35.147
SRR3591711White flower30.667
SRR3591712Green floral bud33.309
SRR3591713Yellow flower35.139
SRP173429 SRR8316895Juvenile bud stage 9.917
SRR8316896Juvenile bud stage 16.720
SRR8316897Juvenile bud stage 6.386
SRR8316894Third green stage 6.561
SRR8316900Third green stage 24.006
SRR8316901Third green stage 20.867
SRR8316898Complete white stage 19.136
SRR8316899Complete white stage 50.520
SRR8316903Complete white stage 31.028
SRR8316902Silver flowering stage8.681
SRR8316904Silver flowering stage17.662
SRR8316905Silver flowering stage6.319
SRR8316906Gold flowering stage 25.025
SRR8316907Gold flowering stage 24.289
SRR8316908Gold flowering stage 32.163
SRP132670SRR6706286Control4.379
SRR6706287Light intensity 50%4.651
SRR6706288Light intensity 20%5.938
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.712
CNS0095593Slightly white alabastrum(diploid) 25.695
CNS0095594Slightly white alabastrum(diploid) 310.381
CNS0095595Whole white alabastrum(diploid) 26.550
CNS0095596Whole white alabastrum(diploid) 37.386
CNS0095597Whole white alabastrum(diploid) 49.679
CNS0095598Silvery flower (diploied) 117.483
CNS0095599Silvery flower (diploied) 215.777
CNS0095600Silvery flower (diploied) 334.157
CNS0095601Golden flower (diploid) 112.817
CNS0095602Golden flower (diploid) 237.649
CNS0095603Golden flower (diploid) 340.400
CNS0095604Slightly white alabastrum(tetraploid) 112.973
CNS0095605Slightly white alabastrum(tetraploid) 28.149
CNS0095606Slightly white alabastrum(tetraploid) 341.181
CNS0095607Whole white alabastrum(tetraploid) 110.630
CNS0095608Whole white alabastrum(tetraploid) 27.583
CNS0095609Whole white alabastrum(tetraploid) 333.404
CNS0095610Silvery flower (tetraploid) 134.058
CNS0095611Silvery flower (tetraploid) 235.001
CNS0095612Silvery flower (tetraploid) 322.366
CNS0095613Golden flower (tetraploid) 17.237
CNS0095614Golden flower (tetraploid) 227.323
CNS0095615Golden flower (tetraploid) 321.216
CRA001975CRR073297Stem 18.123
CRR073298Stem 27.161
CRR073299Stem 33.688
CRR073300Leaf 111.965
CRR073301Leaf 27.016
CRR073302Leaf 37.530
CRR073303Juvenile bud 17.197
CRR073304Juvenile bud 28.860
CRR073305Juvenile bud 312.678
CRR073306Third green 13.905
CRR073307Third green 22.091
CRR073308Third green 33.340
CRR073309Second white 18.182
CRR073310Second white 25.769
CRR073311Second white 36.667
CRR073312Silver flowering 12.187
CRR073313Silver flowering 22.742
CRR073314Silver flowering 34.146
CRR073315Gold flowering 12.296
CRR073316Gold flowering 27.956
CRR073317Gold flowering 34.282
CRR073318Tawny withering 16.156
CRR073319Tawny withering 26.297
CRR073320Tawny withering 36.579